RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ZNF573Q86YE8 665 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 C1QL4Q86Z23 238 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 UBALD2Q8IYN6 164 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 TCTEX1D2Q8WW35 142 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 IL22RA2Q969J5 263 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 SSX3Q99909 188 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 NIPSNAP3BQ9BS92 247 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 SPRY4Q9C004 299 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 PSENENQ9NZ42 101 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 DOK5Q9P104 306 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 B4GALT7Q9UBV7 327 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 IL17BQ9UHF5 180 aa6.34□□□□□ -1.39
LIMA1-213ENST00000552720 A0A1B0GU03 582 aa6.34□□□□□ -1.4
LIMA1-213ENST00000552720 CDIPTO14735 213 aa6.34□□□□□ -1.4
LIMA1-213ENST00000552720 IFNA5P01569 189 aa6.34□□□□□ -1.4
LIMA1-213ENST00000552720 TRGC2P03986 189 aa6.34□□□□□ -1.4
LIMA1-213ENST00000552720 CD200P41217 278 aa6.34□□□□□ -1.4
LIMA1-213ENST00000552720 LINC01559Q495D7 138 aa6.34□□□□□ -1.4
LIMA1-213ENST00000552720 SPANXN5Q5MJ07 72 aa6.34□□□□□ -1.4
LIMA1-213ENST00000552720 DCAF10Q5QP82 559 aa6.34□□□□□ -1.4
LIMA1-213ENST00000552720 ATP1A1-AS1Q5TC04 95 aa6.34□□□□□ -1.4
LIMA1-213ENST00000552720 ZNF787Q6DD87 383 aa6.34□□□□□ -1.4
LIMA1-213ENST00000552720 ZNF525Q8N782 197 aa6.34□□□□□ -1.4
LIMA1-213ENST00000552720 SCCPDHQ8NBX0 429 aa6.34□□□□□ -1.4
LIMA1-213ENST00000552720 CABLES2Q9BTV7 478 aa6.34□□□□□ -1.4
LIMA1-213ENST00000552720 GGACTQ9BVM4 153 aa6.34□□□□□ -1.4
LIMA1-213ENST00000552720 OR2J1Q9GZK6 312 aa6.34□□□□□ -1.4
LIMA1-213ENST00000552720 TRAPPC2LQ9UL33 140 aa6.34□□□□□ -1.4
LIMA1-213ENST00000552720 RNF150Q9ULK6 438 aa6.34□□□□□ -1.4
LIMA1-213ENST00000552720 MPC1Q9Y5U8 109 aa6.34□□□□□ -1.4
LIMA1-213ENST00000552720 TET2Q6N021 2002 aaPredicted RBP6.33□□□□□ -1.4
LIMA1-213ENST00000552720 INTS1Q8N201 2190 aaKnown RBP6.33□□□□□ -1.4
LIMA1-213ENST00000552720 KALRNO60229 2985 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 MGAQ8IWI9 3026 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 ICE1Q9Y2F5 2266 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 TRBV6-6A0A0A6YYG2 114 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 OR5B21A6NL26 309 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.33□□□□□ -1.4
LIMA1-213ENST00000552720 HIST1H2BKO60814 126 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 RAMP3O60896 148 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 HIST1H2BJP06899 126 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 CD55P08174 381 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 HIST1H2BOP23527 126 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 HIST1H2BBP33778 126 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 CEACAM6P40199 344 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 MEOX1P50221 254 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 HIST1H2BDP58876 126 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 LINC00205P59089 165 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 HIST1H2BCP62807 126 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 OR8G1Q15617 311 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 HIST2H2BEQ16778 126 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 KHDC3LQ587J8 217 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 PYY3Q5JQD4 70 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 FAM209BQ5JX69 171 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.33□□□□□ -1.4
LIMA1-213ENST00000552720 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.33□□□□□ -1.4
LIMA1-213ENST00000552720 CXorf67Q86X51 503 aaPredicted RBP6.33□□□□□ -1.4
LIMA1-213ENST00000552720 C1orf210Q8IVY1 113 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 MCEMP1Q8IX19 187 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 DRAM1Q8N682 238 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 HIST1H2BHQ93079 126 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 RBMXL1Q96E39 390 aaKnown RBP6.33□□□□□ -1.4
LIMA1-213ENST00000552720 RCC1LQ96I51 464 aaKnown RBP6.33□□□□□ -1.4
LIMA1-213ENST00000552720 RAB40CQ96S21 281 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 HIST1H2BNQ99877 126 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 HIST1H2BMQ99879 126 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 RIMS4Q9H426 269 aaPredicted RBP6.33□□□□□ -1.4
LIMA1-213ENST00000552720 PLK3Q9H4B4 646 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 UNKLQ9H9P5 680 aaKnown RBP6.33□□□□□ -1.4
LIMA1-213ENST00000552720 GP6Q9HCN6 339 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 OR14J1Q9UGF5 321 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 PCNX2A6NKB5 2137 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 A0A087WWC5 75 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 UBE2L5PA0A1B0GUS4 154 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 J3QT63 122 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 DFFBO76075 338 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 IGKV1D-33P01593 117 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 IGKV1-33P01594 117 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 IGHV2-70P01814 119 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 GRPP07492 148 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 HOXA5P20719 270 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 S100GP29377 79 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 GLIPR1P48060 266 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 C4orf17Q53FE4 359 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 RNFT1Q5M7Z0 435 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 OR8G2PQ6IF36 304 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 ZNF497Q6ZNH5 498 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 LILRB2Q8N423 598 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 SCGB1C1Q8TD33 95 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 GTF3AQ92664 365 aaKnown RBP6.33□□□□□ -1.4
LIMA1-213ENST00000552720 C5orf30Q96GV9 206 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 WDYHV1Q96HA8 205 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 OR4C12Q96R67 309 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 ARRDC1-AS1Q9H2J1 176 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 OR51M1Q9H341 326 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 TMPRSS5Q9H3S3 457 aa6.33□□□□□ -1.4
LIMA1-213ENST00000552720 PSPNO60542 156 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 HBE1P02100 147 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 SOD3P08294 240 aa6.32□□□□□ -1.4
LIMA1-213ENST00000552720 BCL2P10415 239 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms