RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 MMP28Q9H239 520 aa17.21■□□□□ 0.34
VPS29-206ENST00000549578 RDH8Q9NYR8 311 aa17.21■□□□□ 0.34
VPS29-206ENST00000549578 GSTZ1O43708 216 aaPredicted RBP17.2■□□□□ 0.34
VPS29-206ENST00000549578 DIRAS3O95661 229 aa17.2■□□□□ 0.34
VPS29-206ENST00000549578 BPIFB3P59826 476 aa17.2■□□□□ 0.34
VPS29-206ENST00000549578 ACTBP60709 375 aa17.2■□□□□ 0.34
VPS29-206ENST00000549578 ACTG1P63261 375 aa17.2■□□□□ 0.34
VPS29-206ENST00000549578 SLC25A48Q6ZT89 311 aaKnown RBP17.2■□□□□ 0.34
VPS29-206ENST00000549578 MFSD4AQ8N468 514 aa17.2■□□□□ 0.34
VPS29-206ENST00000549578 SRRQ9GZT4 340 aa17.2■□□□□ 0.34
VPS29-206ENST00000549578 LANCL1O43813 399 aa17.19■□□□□ 0.34
VPS29-206ENST00000549578 PMP2P02689 132 aa17.19■□□□□ 0.34
VPS29-206ENST00000549578 CTXN2P0C2S0 81 aa17.19■□□□□ 0.34
VPS29-206ENST00000549578 PAX6P26367 422 aa17.19■□□□□ 0.34
VPS29-206ENST00000549578 Q3ZCU0 254 aa17.19■□□□□ 0.34
VPS29-206ENST00000549578 LINC00299Q6ZSB3 139 aa17.19■□□□□ 0.34
VPS29-206ENST00000549578 C9orf139Q6ZV77 190 aa17.19■□□□□ 0.34
VPS29-206ENST00000549578 Q8N402 240 aa17.19■□□□□ 0.34
VPS29-206ENST00000549578 C8orf31Q8N9H6 132 aa17.19■□□□□ 0.34
VPS29-206ENST00000549578 OR2AK2Q8NG84 335 aa17.19■□□□□ 0.34
VPS29-206ENST00000549578 OR10X1Q8NGY0 326 aa17.19■□□□□ 0.34
VPS29-206ENST00000549578 AJUBAQ96IF1 538 aa17.19■□□□□ 0.34
VPS29-206ENST00000549578 ABHD14AQ9BUJ0 271 aa17.19■□□□□ 0.34
VPS29-206ENST00000549578 AKIP1Q9NQ31 210 aa17.19■□□□□ 0.34
VPS29-206ENST00000549578 NECAP2Q9NVZ3 263 aa17.19■□□□□ 0.34
VPS29-206ENST00000549578 RBMX2Q9Y388 322 aaKnown RBP17.19■□□□□ 0.34
VPS29-206ENST00000549578 MDFIC2A0A1B0GVS7 189 aa17.18■□□□□ 0.34
VPS29-206ENST00000549578 BUB1B-PAK6H3BSN5 160 aa17.18■□□□□ 0.34
VPS29-206ENST00000549578 ST8SIA5O15466 376 aa17.18■□□□□ 0.34
VPS29-206ENST00000549578 NFYAP23511 347 aaPredicted RBP17.18■□□□□ 0.34
VPS29-206ENST00000549578 HTR1DP28221 377 aa17.18■□□□□ 0.34
VPS29-206ENST00000549578 HRH1P35367 487 aa17.18■□□□□ 0.34
VPS29-206ENST00000549578 RFX2P48378 723 aa17.18■□□□□ 0.34
VPS29-206ENST00000549578 TAS2R46P59540 309 aa17.18■□□□□ 0.34
VPS29-206ENST00000549578 CDK10Q15131 360 aa17.18■□□□□ 0.34
VPS29-206ENST00000549578 LY6G6FQ5SQ64 297 aa17.18■□□□□ 0.34
VPS29-206ENST00000549578 H1FOOQ8IZA3 346 aaPredicted RBP17.18■□□□□ 0.34
VPS29-206ENST00000549578 LINC00311Q8N616 119 aa17.18■□□□□ 0.34
VPS29-206ENST00000549578 OR5H2Q8NGV7 314 aa17.18■□□□□ 0.34
VPS29-206ENST00000549578 SLC6A7Q99884 636 aa17.18■□□□□ 0.34
VPS29-206ENST00000549578 C11orf54Q9H0W9 315 aaPredicted RBP17.18■□□□□ 0.34
VPS29-206ENST00000549578 EHFQ9NZC4 300 aa17.18■□□□□ 0.34
VPS29-206ENST00000549578 TBL2Q9Y4P3 447 aaKnown RBP17.18■□□□□ 0.34
VPS29-206ENST00000549578 OR5H8P0DN80 308 aa17.17■□□□□ 0.34
VPS29-206ENST00000549578 OR3A3P47888 321 aa17.17■□□□□ 0.34
VPS29-206ENST00000549578 ZNF45Q02386 682 aa17.17■□□□□ 0.34
VPS29-206ENST00000549578 DEFB112Q30KQ8 113 aa17.17■□□□□ 0.34
VPS29-206ENST00000549578 THAP7Q9BT49 309 aaPredicted RBP17.17■□□□□ 0.34
VPS29-206ENST00000549578 TOLLIPQ9H0E2 274 aa17.17■□□□□ 0.34
VPS29-206ENST00000549578 ZNF736B4DX44 427 aaPredicted RBP17.16■□□□□ 0.34
VPS29-206ENST00000549578 SSBP1Q04837 148 aaKnown RBP17.16■□□□□ 0.34
VPS29-206ENST00000549578 MINOS1Q5TGZ0 78 aa17.16■□□□□ 0.34
VPS29-206ENST00000549578 OVCH2Q7RTZ1 564 aa17.16■□□□□ 0.34
VPS29-206ENST00000549578 LYG1Q8N1E2 194 aa17.16■□□□□ 0.34
VPS29-206ENST00000549578 DYNAPQ8N1N2 210 aa17.16■□□□□ 0.34
VPS29-206ENST00000549578 EDARADDQ8WWZ3 215 aa17.16■□□□□ 0.34
VPS29-206ENST00000549578 TRIM63Q969Q1 353 aa17.16■□□□□ 0.34
VPS29-206ENST00000549578 IFI27L2Q9H2X8 130 aa17.16■□□□□ 0.34
VPS29-206ENST00000549578 DPM3Q9P2X0 92 aa17.16■□□□□ 0.34
VPS29-206ENST00000549578 FAM96BQ9Y3D0 163 aa17.16■□□□□ 0.34
VPS29-206ENST00000549578 AMMECR1Q9Y4X0 333 aaPredicted RBP17.16■□□□□ 0.34
VPS29-206ENST00000549578 HILPDAQ9Y5L2 63 aa17.16■□□□□ 0.34
VPS29-206ENST00000549578 MINOS1-NBL1R4GNA1 71 aa17.16■□□□□ 0.34
VPS29-206ENST00000549578 ZFHX3Q15911 3703 aa17.16■□□□□ 0.34
VPS29-206ENST00000549578 J3QRK9 145 aa17.16■□□□□ 0.34
VPS29-206ENST00000549578 M0QYG6 137 aa17.16■□□□□ 0.34
VPS29-206ENST00000549578 CD3DP04234 171 aa17.16■□□□□ 0.34
VPS29-206ENST00000549578 FAM157CP0CG43 387 aa17.16■□□□□ 0.34
VPS29-206ENST00000549578 FCGR2CP31995 323 aa17.16■□□□□ 0.34
VPS29-206ENST00000549578 SSX2Q16385 188 aa17.16■□□□□ 0.34
VPS29-206ENST00000549578 ZNF48Q96MX3 618 aaPredicted RBP17.16■□□□□ 0.34
VPS29-206ENST00000549578 SDHCQ99643 169 aaPredicted RBP17.16■□□□□ 0.34
VPS29-206ENST00000549578 NIPBLQ6KC79 2804 aaeCLIP17.15■□□□□ 0.34
VPS29-206ENST00000549578 LEUTXA8MZ59 168 aa17.15■□□□□ 0.34
VPS29-206ENST00000549578 LY6LH3BQJ8 138 aa17.15■□□□□ 0.34
VPS29-206ENST00000549578 TAS2R19P59542 299 aa17.15■□□□□ 0.34
VPS29-206ENST00000549578 DYRK1AQ13627 763 aa17.15■□□□□ 0.34
VPS29-206ENST00000549578 DIAPH2-AS1Q14236 149 aa17.15■□□□□ 0.34
VPS29-206ENST00000549578 GDPD1Q8N9F7 314 aa17.15■□□□□ 0.34
VPS29-206ENST00000549578 TMEM229BQ8NBD8 167 aa17.15■□□□□ 0.34
VPS29-206ENST00000549578 ABHD14BQ96IU4 210 aa17.15■□□□□ 0.34
VPS29-206ENST00000549578 AGMATQ9BSE5 352 aa17.15■□□□□ 0.34
VPS29-206ENST00000549578 TINAGL1Q9GZM7 467 aaPredicted RBP17.15■□□□□ 0.34
VPS29-206ENST00000549578 RNF150Q9ULK6 438 aa17.15■□□□□ 0.34
VPS29-206ENST00000549578 ITGB1BP1O14713 200 aa17.14■□□□□ 0.33
VPS29-206ENST00000549578 TUSC2O75896 110 aa17.14■□□□□ 0.33
VPS29-206ENST00000549578 FBP1P09467 338 aa17.14■□□□□ 0.33
VPS29-206ENST00000549578 CSF1P09603 554 aa17.14■□□□□ 0.33
VPS29-206ENST00000549578 OR8U9P0C7N5 309 aa17.14■□□□□ 0.33
VPS29-206ENST00000549578 RAB7AP51149 207 aa17.14■□□□□ 0.33
VPS29-206ENST00000549578 SCGB2A2Q13296 93 aa17.14■□□□□ 0.33
VPS29-206ENST00000549578 BAK1Q16611 211 aa17.14■□□□□ 0.33
VPS29-206ENST00000549578 PLA1AQ53H76 456 aa17.14■□□□□ 0.33
VPS29-206ENST00000549578 ACTBL2Q562R1 376 aa17.14■□□□□ 0.33
VPS29-206ENST00000549578 TPTE2P1Q5T6R2 138 aa17.14■□□□□ 0.33
VPS29-206ENST00000549578 LDLRAD3Q86YD5 345 aa17.14■□□□□ 0.33
VPS29-206ENST00000549578 ODF3L1Q8IXM7 274 aa17.14■□□□□ 0.33
VPS29-206ENST00000549578 OR4D10Q8NGI6 311 aa17.14■□□□□ 0.33
VPS29-206ENST00000549578 OR8U1Q8NH10 309 aa17.14■□□□□ 0.33
VPS29-206ENST00000549578 S100ZQ8WXG8 99 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms