RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 NMSQ5H8A3 153 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 GFRALQ6UXV0 394 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 HSD17B13Q7Z5P4 300 aaPredicted RBP9.29□□□□□ -0.92
CUX1-212ENST00000547394 Q8IYB0 196 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 FAM57AQ8TBR7 257 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 TMEM171Q8WVE6 324 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 MARC2Q969Z3 335 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 SNRNP40Q96DI7 357 aaKnown RBP9.29□□□□□ -0.92
CUX1-212ENST00000547394 TMEM56Q96MV1 263 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 RIMS4Q9H426 269 aaPredicted RBP9.29□□□□□ -0.92
CUX1-212ENST00000547394 TREM1Q9NP99 234 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 LPAR3Q9UBY5 353 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 CACNG5Q9UF02 275 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 TMEM56-RWDD3S4R434 201 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 DSCAMO60469 2012 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 IGKV1D-17A0A075B6S4 117 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 KRBOX1C9JBD0 128 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 CRYABP02511 175 aaKnown RBP9.29□□□□□ -0.92
CUX1-212ENST00000547394 CTXN2P0C2S0 81 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 ADCYAP1P18509 176 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 KITLGP21583 273 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 UCP1P25874 307 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 EDDM3BP56851 147 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 ERVFRD-1P60508 538 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 RPL30P62888 115 aaKnown RBP9.29□□□□□ -0.92
CUX1-212ENST00000547394 RUNX1Q01196 453 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 ZNF273Q14593 569 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 GUCA2BQ16661 112 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 Q6ZRG5 221 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 ARL11Q969Q4 196 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 AIFM2Q9BRQ8 373 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 CABLES2Q9BTV7 478 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 HES4Q9HCC6 221 aa9.29□□□□□ -0.92
CUX1-212ENST00000547394 TMEM30CPA0ZSE6 113 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 TMEM210A6NLX4 147 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 A8MXE2 369 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 J3QW42 95 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 TOR1AO14656 332 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 FGF16O43320 207 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 CYB5R3P00387 301 aaPredicted RBP9.28□□□□□ -0.92
CUX1-212ENST00000547394 KRASP01116 189 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 TBR1Q16650 682 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 AKIRIN2Q53H80 203 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 ODF3L1Q8IXM7 274 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 OR2C3Q8N628 320 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 LRRC46Q96FV0 321 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 BOD1Q96IK1 185 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 POMT1Q9Y6A1 747 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 MED13LQ71F56 2210 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 IGKV1-5P01602 117 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 HEXAP06865 529 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 PRDX2P32119 198 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 KLF3P57682 345 aaPredicted RBP9.28□□□□□ -0.92
CUX1-212ENST00000547394 CCL8P80075 99 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 ZNF585BQ52M93 769 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 TIMM23BQ5SRD1 257 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 TMEM182Q6ZP80 229 aaPredicted RBP9.28□□□□□ -0.92
CUX1-212ENST00000547394 GCSAMQ8N6F7 178 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 MED9Q9NWA0 146 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 KCNIP1Q9NZI2 227 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 PSG11Q9UQ72 335 aa9.28□□□□□ -0.92
CUX1-212ENST00000547394 YLPM1P49750 1951 aaKnown RBP9.28□□□□□ -0.92
CUX1-212ENST00000547394 TRBV6-6A0A0A6YYG2 114 aa9.27□□□□□ -0.92
CUX1-212ENST00000547394 C9JQL5 133 aa9.27□□□□□ -0.92
CUX1-212ENST00000547394 PRSS44E7EML9 344 aa9.27□□□□□ -0.92
CUX1-212ENST00000547394 H0Y980 276 aa9.27□□□□□ -0.92
CUX1-212ENST00000547394 HOXB1P14653 301 aaPredicted RBP9.27□□□□□ -0.92
CUX1-212ENST00000547394 VDAC1P21796 283 aa9.27□□□□□ -0.92
CUX1-212ENST00000547394 VAMP2P63027 116 aa9.27□□□□□ -0.92
CUX1-212ENST00000547394 ADAM5Q6NVV9 412 aa9.27□□□□□ -0.92
CUX1-212ENST00000547394 TMEM88Q6PEY1 159 aa9.27□□□□□ -0.92
CUX1-212ENST00000547394 FIP1L1Q6UN15 594 aaKnown RBP9.27□□□□□ -0.92
CUX1-212ENST00000547394 OR5C1Q8NGR4 320 aa9.27□□□□□ -0.92
CUX1-212ENST00000547394 GALMQ96C23 342 aa9.27□□□□□ -0.92
CUX1-212ENST00000547394 IFT22Q9H7X7 185 aa9.27□□□□□ -0.92
CUX1-212ENST00000547394 MBNL3Q9NUK0 354 aaKnown RBP9.27□□□□□ -0.92
CUX1-212ENST00000547394 KIAA1324LA8MWY0 1029 aaPredicted RBP9.27□□□□□ -0.93
CUX1-212ENST00000547394 TXNL1O43396 289 aa9.27□□□□□ -0.93
CUX1-212ENST00000547394 GPR137BO60478 399 aa9.27□□□□□ -0.93
CUX1-212ENST00000547394 PRH1P02810 166 aa9.27□□□□□ -0.93
CUX1-212ENST00000547394 MUC1P15941 1255 aaPredicted RBP9.27□□□□□ -0.93
CUX1-212ENST00000547394 G6PCP35575 357 aa9.27□□□□□ -0.93
CUX1-212ENST00000547394 DYNLT3P51808 116 aa9.27□□□□□ -0.93
CUX1-212ENST00000547394 SMIM21Q3B7S5 101 aa9.27□□□□□ -0.93
CUX1-212ENST00000547394 MBNL2Q5VZF2 373 aaKnown RBP9.27□□□□□ -0.93
CUX1-212ENST00000547394 FAM185AQ8N0U4 392 aa9.27□□□□□ -0.93
CUX1-212ENST00000547394 RAXQ9Y2V3 346 aa9.27□□□□□ -0.93
CUX1-212ENST00000547394 WIPI2Q9Y4P8 454 aa9.27□□□□□ -0.93
CUX1-212ENST00000547394 FAM74A7A6NL05 159 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 PRRG2O14669 202 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 MDH2P40926 338 aaKnown RBP9.26□□□□□ -0.93
CUX1-212ENST00000547394 RND3P61587 244 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 HMGN3Q15651 99 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 SRSF7Q16629 238 aaKnown RBP eCLIP9.26□□□□□ -0.931e-8■■■■■ 28.4
CUX1-212ENST00000547394 FAM74A3Q4VXF1 159 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 TMEM252Q8N6L7 170 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 TDGF1P3P51864 188 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 Q3ZCU0 254 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 ZNF295-AS1Q8N0V1 137 aa9.26□□□□□ -0.93
CUX1-212ENST00000547394 OR5D13Q8NGL4 314 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms