RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 OR10V1Q8NGI7 309 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 OR4K15Q8NH41 348 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 OR1L1Q8NH94 360 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 CT45A3Q8NHU0 189 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 NEK7Q8TDX7 302 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 TFAP2CQ92754 450 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 GHSRQ92847 366 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 SMIM19Q96E16 107 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 S1PR3Q99500 378 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 S100A13Q99584 98 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 HSPB9Q9BQS6 159 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.63□□□□□ -1.35
USP28-215ENST00000545608 PAK1IP1Q9NWT1 392 aaPredicted RBP6.63□□□□□ -1.35
USP28-215ENST00000545608 TRAPPC2LQ9UL33 140 aa6.63□□□□□ -1.35
USP28-215ENST00000545608 A0A1W2PPK0 400 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 C12orf77C9JDV5 145 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 MCRIP1C9JLW8 97 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 ZNF780AO75290 641 aaPredicted RBP6.62□□□□□ -1.35
USP28-215ENST00000545608 MOSP00540 346 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 HBZP02008 142 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 ELANEP08246 267 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 IL3RAP26951 378 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 CDX1P47902 265 aaPredicted RBP6.62□□□□□ -1.35
USP28-215ENST00000545608 BCAP31P51572 246 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 LUMP51884 338 aaPredicted RBP6.62□□□□□ -1.35
USP28-215ENST00000545608 ZNF137PP52743 207 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 CFHR3Q02985 330 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 FOXE3Q13461 319 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 Q3ZCU0 254 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 CXorf66Q5JRM2 361 aaPredicted RBP6.62□□□□□ -1.35
USP28-215ENST00000545608 THOC7Q6I9Y2 204 aaKnown RBP6.62□□□□□ -1.35
USP28-215ENST00000545608 GLIPR1L1Q6UWM5 242 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 LINC00299Q6ZSB3 139 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 SLC25A48Q6ZT89 311 aaKnown RBP6.62□□□□□ -1.35
USP28-215ENST00000545608 STX19Q8N4C7 294 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 RNF152Q8N8N0 203 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 ZNF485Q8NCK3 441 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 ZNF555Q8NEP9 628 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 MUL1Q969V5 352 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 PGLYRP3Q96LB9 341 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 WWC2-AS2Q96NR7 200 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 RASL11BQ9BPW5 248 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 GON7Q9BXV9 100 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 BANF2Q9H503 90 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 RCC2Q9P258 522 aaKnown RBP6.62□□□□□ -1.35
USP28-215ENST00000545608 GNG12Q9UBI6 72 aa6.62□□□□□ -1.35
USP28-215ENST00000545608 DIMT1Q9UNQ2 313 aaKnown RBP6.62□□□□□ -1.35
USP28-215ENST00000545608 MRPS28Q9Y2Q9 187 aaKnown RBP6.62□□□□□ -1.35
USP28-215ENST00000545608 EXOSC1Q9Y3B2 195 aaKnown RBP6.62□□□□□ -1.35
USP28-215ENST00000545608 TRBV5-7A0A0A0MS05 114 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 SPINT2O43291 252 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 RAMP3O60896 148 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 IGHG4P01861 327 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 RCC1P18754 421 aaPredicted RBP6.61□□□□□ -1.35
USP28-215ENST00000545608 MYL12AP19105 171 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 SCAND1P57086 179 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 ADARB1P78563 741 aaKnown RBP6.61□□□□□ -1.35
USP28-215ENST00000545608 GPR176Q14439 515 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 ZNF846Q147U1 533 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 TRIM16LQ309B1 348 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 Q499Y3 187 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 SIGIRRQ6IA17 410 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 RAB12Q6IQ22 244 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 LYPD6Q86Y78 171 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 CLVS1Q8IUQ0 354 aaPredicted RBP6.61□□□□□ -1.35
USP28-215ENST00000545608 GAPTQ8N292 157 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 PRR18Q8N4B5 295 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 JAGN1Q8N5M9 183 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 FAM71E2Q8N5Q1 922 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 OR8H1Q8NGG4 311 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 OR52L2PQ8NGH6 319 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 OR8U1Q8NH10 309 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 S100ZQ8WXG8 99 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 GGHQ92820 318 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 TMEM80Q96HE8 168 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 RITA1Q96K30 269 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 KCTD7Q96MP8 289 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 PRR25Q96S07 402 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 SMPD3Q9NY59 655 aaPredicted RBP6.61□□□□□ -1.35
USP28-215ENST00000545608 ZMAT5Q9UDW3 170 aaKnown RBP6.61□□□□□ -1.35
USP28-215ENST00000545608 LSM4Q9Y4Z0 139 aaKnown RBP6.61□□□□□ -1.35
USP28-215ENST00000545608 PEX16Q9Y5Y5 336 aa6.61□□□□□ -1.35
USP28-215ENST00000545608 DNAH9Q9NYC9 4486 aa6.6□□□□□ -1.35
USP28-215ENST00000545608 PNMA8CA0A1B0GUJ8 204 aa6.6□□□□□ -1.35
USP28-215ENST00000545608 IRGMA1A4Y4 181 aa6.6□□□□□ -1.35
USP28-215ENST00000545608 UBE2QL1A1L167 161 aa6.6□□□□□ -1.35
USP28-215ENST00000545608 TXNL1O43396 289 aa6.6□□□□□ -1.35
USP28-215ENST00000545608 LANCL1O43813 399 aa6.6□□□□□ -1.35
USP28-215ENST00000545608 MAS1P04201 325 aa6.6□□□□□ -1.35
USP28-215ENST00000545608 IGF1P05019 195 aa6.6□□□□□ -1.35
USP28-215ENST00000545608 SLC2A2P11168 524 aaPredicted RBP6.6□□□□□ -1.35
USP28-215ENST00000545608 VDAC1P21796 283 aa6.6□□□□□ -1.35
USP28-215ENST00000545608 MYF6P23409 242 aa6.6□□□□□ -1.35
USP28-215ENST00000545608 PSMB8P28062 276 aa6.6□□□□□ -1.35
USP28-215ENST00000545608 SOX6P35712 828 aa6.6□□□□□ -1.35
USP28-215ENST00000545608 EIF2B2P49770 351 aaKnown RBP6.6□□□□□ -1.35
USP28-215ENST00000545608 TMBIM6P55061 237 aa6.6□□□□□ -1.35
USP28-215ENST00000545608 GP2P55259 537 aaKnown RBP6.6□□□□□ -1.35
USP28-215ENST00000545608 KIAA0141Q14154 515 aaPredicted RBP6.6□□□□□ -1.35
USP28-215ENST00000545608 GNMTQ14749 295 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms