RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	OR7C1	O76099	320 aa	Predicted RBP	12.78	□□□□□ -0.36
CHFR-223	ENST00000544268	NXPH2	O95156	264 aa		12.78	□□□□□ -0.36
CHFR-223	ENST00000544268	MAP1B	P46821	2468 aa	Known RBP	12.78	□□□□□ -0.36
CHFR-223	ENST00000544268	RND3	P61587	244 aa		12.78	□□□□□ -0.36
CHFR-223	ENST00000544268	KRTAP27-1	Q3LI81	207 aa		12.78	□□□□□ -0.36
CHFR-223	ENST00000544268	GPR157	Q5UAW9	335 aa		12.78	□□□□□ -0.36
CHFR-223	ENST00000544268	TMEM42	Q69YG0	159 aa		12.78	□□□□□ -0.36
CHFR-223	ENST00000544268	OSR2	Q8N2R0	312 aa		12.78	□□□□□ -0.36
CHFR-223	ENST00000544268	OR8G5	Q8NG78	346 aa		12.78	□□□□□ -0.36
CHFR-223	ENST00000544268	SMG1	Q96Q15	3661 aa	Known RBP	12.78	□□□□□ -0.36
CHFR-223	ENST00000544268	GPR137B	O60478	399 aa		12.78	□□□□□ -0.36
CHFR-223	ENST00000544268	IFNA21	P01568	189 aa		12.78	□□□□□ -0.36
CHFR-223	ENST00000544268	ARF1	P84077	181 aa	Known RBP	12.78	□□□□□ -0.36
CHFR-223	ENST00000544268	RIPPLY2	Q5TAB7	128 aa		12.78	□□□□□ -0.36
CHFR-223	ENST00000544268	SGPP2	Q8IWX5	399 aa		12.78	□□□□□ -0.36
CHFR-223	ENST00000544268	ZNF611	Q8N823	705 aa		12.78	□□□□□ -0.36
CHFR-223	ENST00000544268	OR52M1	Q8NGK5	317 aa		12.78	□□□□□ -0.36
CHFR-223	ENST00000544268	RFNG	Q9Y644	331 aa		12.78	□□□□□ -0.36
CHFR-223	ENST00000544268	PTPRQ	Q9UMZ3	2332 aa		12.78	□□□□□ -0.36
CHFR-223	ENST00000544268	PIEZO2	Q9H5I5	2752 aa		12.77	□□□□□ -0.36
CHFR-223	ENST00000544268	NGF	P01138	241 aa		12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	CTSD	P07339	412 aa	Predicted RBP	12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	RND2	P52198	227 aa		12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	CCL20	P78556	96 aa		12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	RNPS1	Q15287	305 aa	Known RBP	12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	CNN3	Q15417	329 aa	Known RBP	12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	FAM189A2	Q15884	450 aa		12.77	□□□□□ -0.37
CHFR-223	ENST00000544268		Q6ZS92	163 aa		12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	RBMXL3	Q8N7X1	1067 aa	Known RBP	12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	OR56B2P	Q8NGI1	322 aa		12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	RTN4IP1	Q8WWV3	396 aa	Predicted RBP	12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	GAL3ST2	Q9H3Q3	398 aa		12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	SLC22A20	A6NK97	555 aa		12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	SLC33A1	O00400	549 aa	Predicted RBP	12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	LILRA1	O75019	489 aa		12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	MBP	P02686	304 aa	Predicted RBP	12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	TK1	P04183	234 aa		12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	ZNF728	P0DKX0	622 aa		12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	ERVFC1-1	P60608	527 aa		12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	DMRTA1	Q5VZB9	504 aa		12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	TMEM182	Q6ZP80	229 aa	Predicted RBP	12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	MCEMP1	Q8IX19	187 aa		12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	C10orf35	Q96D05	121 aa		12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	PRDM14	Q9GZV8	571 aa		12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	TMEM242	Q9NWH2	141 aa		12.77	□□□□□ -0.37
CHFR-223	ENST00000544268	MED12L	Q86YW9	2145 aa		12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	C5orf49	A4QMS7	147 aa		12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	HSPB1	P04792	205 aa	Known RBP	12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	BCL3	P20749	454 aa		12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	CEBPG	P53567	150 aa		12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	LHFPL2	Q6ZUX7	228 aa		12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	NUFIP2	Q7Z417	695 aa	Known RBP	12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	OR10A7	Q8NGE5	316 aa		12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	CDH20	Q9HBT6	801 aa		12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	SLC2A9	Q9NRM0	540 aa		12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	NECAP2	Q9NVZ3	263 aa		12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	KIAA1456	Q9P272	454 aa		12.76	□□□□□ -0.37
CHFR-223	ENST00000544268		M0QZK8	103 aa		12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	AQP7	O14520	342 aa		12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	GGCT	O75223	188 aa	Known RBP	12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	AADAC	P22760	399 aa		12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	GPM6A	P51674	278 aa		12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	TMEM187	Q14656	261 aa		12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	SPSB3	Q6PJ21	355 aa		12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	MEX3B	Q6ZN04	569 aa	Known RBP	12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	OR1P1	Q8NH06	330 aa		12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	ZNF488	Q96MN9	340 aa		12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	ZNF442	Q9H7R0	627 aa		12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	PLSCR2	Q9NRY7	297 aa		12.76	□□□□□ -0.37
CHFR-223	ENST00000544268	TRBV24-1	A0A075B6N3	115 aa		12.75	□□□□□ -0.37
CHFR-223	ENST00000544268		K7ENP7	123 aa		12.75	□□□□□ -0.37
CHFR-223	ENST00000544268	CDKN1B	P46527	198 aa		12.75	□□□□□ -0.37
CHFR-223	ENST00000544268	RBM11	P57052	281 aa	Known RBP	12.75	□□□□□ -0.37
CHFR-223	ENST00000544268	HLA-DRB3	P79483	266 aa		12.75	□□□□□ -0.37
CHFR-223	ENST00000544268	OR8B8	Q15620	311 aa		12.75	□□□□□ -0.37
CHFR-223	ENST00000544268	COA6	Q5JTJ3	125 aa	Known RBP	12.75	□□□□□ -0.37
CHFR-223	ENST00000544268	INO80C	Q6PI98	192 aa	Predicted RBP	12.75	□□□□□ -0.37
CHFR-223	ENST00000544268	THNSL2	Q86YJ6	484 aa		12.75	□□□□□ -0.37
CHFR-223	ENST00000544268	CYB561D1	Q8N8Q1	229 aa		12.75	□□□□□ -0.37
CHFR-223	ENST00000544268	NEK7	Q8TDX7	302 aa		12.75	□□□□□ -0.37
CHFR-223	ENST00000544268	ABHD17A	Q96GS6	310 aa		12.75	□□□□□ -0.37
CHFR-223	ENST00000544268	TP53RK	Q96S44	253 aa		12.75	□□□□□ -0.37
CHFR-223	ENST00000544268	DECR2	Q9NUI1	292 aa		12.75	□□□□□ -0.37
CHFR-223	ENST00000544268	PRR14L	Q5THK1	2151 aa		12.75	□□□□□ -0.37
CHFR-223	ENST00000544268	CLDN34	H7C241	214 aa		12.74	□□□□□ -0.37
CHFR-223	ENST00000544268	SMPD2	O60906	423 aa		12.74	□□□□□ -0.37
CHFR-223	ENST00000544268	NXPH3	O95157	252 aa		12.74	□□□□□ -0.37
CHFR-223	ENST00000544268	EPHA1	P21709	976 aa		12.74	□□□□□ -0.37
CHFR-223	ENST00000544268	PLA2G5	P39877	138 aa		12.74	□□□□□ -0.37
CHFR-223	ENST00000544268	ABCA11P	Q4W5N1	156 aa		12.74	□□□□□ -0.37
CHFR-223	ENST00000544268	ASCL4	Q6XD76	172 aa		12.74	□□□□□ -0.37
CHFR-223	ENST00000544268	SLC35G3	Q8N808	338 aa		12.74	□□□□□ -0.37
CHFR-223	ENST00000544268	APH1A	Q96BI3	265 aa		12.74	□□□□□ -0.37
CHFR-223	ENST00000544268	LINC00470	Q9BZP3	86 aa		12.74	□□□□□ -0.37
CHFR-223	ENST00000544268	NAA60	Q9H7X0	242 aa		12.74	□□□□□ -0.37
CHFR-223	ENST00000544268	HSF4	Q9ULV5	492 aa		12.74	□□□□□ -0.37
CHFR-223	ENST00000544268	WSB1	Q9Y6I7	421 aa		12.74	□□□□□ -0.37
CHFR-223	ENST00000544268	IGHV3-64D	A0A0J9YX35	117 aa		12.74	□□□□□ -0.37
CHFR-223	ENST00000544268	SCAF4	O95104	1147 aa	Known RBP	12.74	□□□□□ -0.37
CHFR-223	ENST00000544268	ICAM4	Q14773	271 aa		12.74	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms