RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	HIST1H2BJ	P06899	126 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	CTXN2	P0C2S0	81 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	HIST1H2BO	P23527	126 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	HIST1H2BB	P33778	126 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	GLIPR1	P48060	266 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	HIST1H2BD	P58876	126 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	RAB11A	P62491	216 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	HIST1H2BC	P62807	126 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	HIST2H2BE	Q16778	126 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	KHDC3L	Q587J8	217 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	10.61	□□□□□ -0.71
RNF4-222	ENST00000541204		Q6ZRM9	215 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	SAXO1	Q8IYX7	474 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	IL1F10	Q8WWZ1	152 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	BCL2L2	Q92843	193 aa	Predicted RBP	10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	HIST1H2BH	Q93079	126 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	HIST1H2BN	Q99877	126 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	HIST1H2BM	Q99879	126 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	VSIR	Q9H7M9	311 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	ZDHHC11	Q9H8X9	412 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	ASCL3	Q9NQ33	180 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	ERRFI1	Q9UJM3	462 aa	Predicted RBP	10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	AKAP13	Q12802	2813 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	GVINP1	Q7Z2Y8	2422 aa		10.61	□□□□□ -0.71
RNF4-222	ENST00000541204	LOC102723971	A0A1B0GUV8	181 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	RHBDL1	O75783	438 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	IFNA5	P01569	189 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	SERPINE2	P07093	398 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	HLA-DRB3	P79483	266 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	OR8G1	Q15617	311 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	SLC35E3	Q7Z769	313 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	OR10J5	Q8NHC4	309 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	RNASE11	Q8TAA1	199 aa	Known RBP	10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	IL22RA2	Q969J5	263 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	PRR14L	Q5THK1	2151 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	DFFB	O76075	338 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	IAPP	P10997	89 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	SELE	P16581	610 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	S100A2	P29034	98 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	CD200	P41217	278 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	FGF8	P55075	233 aa	Predicted RBP	10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	PDZD11	Q5EBL8	140 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	GFI1B	Q5VTD9	330 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	ZNF324B	Q6AW86	544 aa	Predicted RBP	10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	LCN15	Q6UWW0	184 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	DPPA3	Q6W0C5	159 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	SIRT7	Q9NRC8	400 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	RPRM	Q9NS64	109 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	GAR1	Q9NY12	217 aa	Known RBP	10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	OR2W1	Q9Y3N9	320 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	CACNA1G	O43497	2377 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	MED12L	Q86YW9	2145 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	TRAV39	A0A0B4J263	110 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	CXorf65	A6NEN9	183 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	COX5B	P10606	129 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	OR2B11	Q5JQS5	317 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	ALKBH2	Q6NS38	261 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	ZNF665	Q9H7R5	613 aa		10.6	□□□□□ -0.71
RNF4-222	ENST00000541204	TRAV24	A0A0B4J272	114 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204		A0A1B0GU03	582 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	METTL15P1	P0C7V9	234 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	IGHV1-2	P23083	117 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	S100G	P29377	79 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	ALKBH6	Q3KRA9	238 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	FAM90A2P	Q658T7	463 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	FAM180A	Q6UWF9	173 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	SSX7	Q7RTT5	188 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	PRR18	Q8N4B5	295 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	LINC00469	Q8N7U9	141 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	OR5P3	Q8WZ94	311 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	OR2J1	Q9GZK6	312 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	OR1A1	Q9P1Q5	309 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	CACNG5	Q9UF02	275 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	AGFG2	O95081	481 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	CNOT4	O95628	575 aa	Known RBP	10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	UBE2N	P61088	152 aa	Known RBP	10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	ARL16	Q0P5N6	197 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	ZNF726P1	Q15940	193 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	C9orf152	Q5JTZ5	239 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	ZNF787	Q6DD87	383 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	HIPK2	Q9H2X6	1198 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	DMRT1	Q9Y5R6	373 aa		10.59	□□□□□ -0.71
RNF4-222	ENST00000541204	IGKV1-39	P01597	117 aa		10.58	□□□□□ -0.72
RNF4-222	ENST00000541204	IGKV1D-39	P04432	117 aa		10.58	□□□□□ -0.72
RNF4-222	ENST00000541204	SOD3	P08294	240 aa		10.58	□□□□□ -0.72
RNF4-222	ENST00000541204	HOXA4	Q00056	320 aa	Predicted RBP	10.58	□□□□□ -0.72
RNF4-222	ENST00000541204	H1FOO	Q8IZA3	346 aa	Predicted RBP	10.58	□□□□□ -0.72
RNF4-222	ENST00000541204	OR5A2	Q8NGI9	324 aa		10.58	□□□□□ -0.72
RNF4-222	ENST00000541204	OR10D4P	Q8NGN7	298 aa		10.58	□□□□□ -0.72
RNF4-222	ENST00000541204	UBALD1	Q8TB05	177 aa		10.58	□□□□□ -0.72
RNF4-222	ENST00000541204	SCGB1C1	Q8TD33	95 aa		10.58	□□□□□ -0.72
RNF4-222	ENST00000541204	NANOS1	Q8WY41	292 aa	Known RBP	10.58	□□□□□ -0.72
RNF4-222	ENST00000541204	RAB40C	Q96S21	281 aa		10.58	□□□□□ -0.72
RNF4-222	ENST00000541204	PPP1R3C	Q9UQK1	317 aa		10.58	□□□□□ -0.72
RNF4-222	ENST00000541204	ARHGAP21	Q5T5U3	1957 aa		10.58	□□□□□ -0.72
RNF4-222	ENST00000541204	TRAV1-1	A0A0B4J248	108 aa		10.58	□□□□□ -0.72
RNF4-222	ENST00000541204	SS18L1	O75177	396 aa	Predicted RBP	10.58	□□□□□ -0.72
RNF4-222	ENST00000541204	TBC1D28	Q2M2D7	210 aa		10.58	□□□□□ -0.72
RNF4-222	ENST00000541204	ZNF383	Q8NA42	475 aa		10.58	□□□□□ -0.72

Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms