RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 LINC01590Q5TEZ4 76 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 P2RX4Q99571 388 aa12.14□□□□□ -0.47
USP3-204ENST00000540797 F5H697 171 aa12.13□□□□□ -0.47
USP3-204ENST00000540797 RPL27AP46776 148 aaKnown RBP12.13□□□□□ -0.47
USP3-204ENST00000540797 FAM162BQ5T6X4 162 aa12.13□□□□□ -0.47
USP3-204ENST00000540797 OR4X1Q8NH49 305 aa12.13□□□□□ -0.47
USP3-204ENST00000540797 TMEM167BQ9NRX6 74 aa12.13□□□□□ -0.47
USP3-204ENST00000540797 GAR1Q9NY12 217 aaKnown RBP12.13□□□□□ -0.47
USP3-204ENST00000540797 CKAP5Q14008 2032 aa12.13□□□□□ -0.47
USP3-204ENST00000540797 CECR9P0C854 216 aa12.13□□□□□ -0.47
USP3-204ENST00000540797 PAFAH1B2P68402 229 aa12.13□□□□□ -0.47
USP3-204ENST00000540797 CFHR1Q03591 330 aa12.13□□□□□ -0.47
USP3-204ENST00000540797 SAXO1Q8IYX7 474 aa12.13□□□□□ -0.47
USP3-204ENST00000540797 WDYHV1Q96HA8 205 aa12.13□□□□□ -0.47
USP3-204ENST00000540797 SIRT7Q9NRC8 400 aa12.13□□□□□ -0.47
USP3-204ENST00000540797 RABAC1Q9UI14 185 aa12.13□□□□□ -0.47
USP3-204ENST00000540797 OR1L1Q8NH94 360 aa12.13□□□□□ -0.47
USP3-204ENST00000540797 WASHC3Q9Y3C0 194 aa12.13□□□□□ -0.47
USP3-204ENST00000540797 MRPS18CQ9Y3D5 142 aaKnown RBP12.13□□□□□ -0.47
USP3-204ENST00000540797 C1orf100Q5SVJ3 147 aa12.13□□□□□ -0.47
USP3-204ENST00000540797 FAM78BQ5VT40 261 aa12.13□□□□□ -0.47
USP3-204ENST00000540797 ZDHHC11Q9H8X9 412 aa12.13□□□□□ -0.47
USP3-204ENST00000540797 METTL1Q9UBP6 276 aaKnown RBP12.13□□□□□ -0.47
USP3-204ENST00000540797 TRIM77I1YAP6 450 aa12.12□□□□□ -0.47
USP3-204ENST00000540797 SFTA3P0C7M3 94 aa12.12□□□□□ -0.47
USP3-204ENST00000540797 LINC00271P0C7V0 271 aa12.12□□□□□ -0.47
USP3-204ENST00000540797 HTR1DP28221 377 aa12.12□□□□□ -0.47
USP3-204ENST00000540797 ZNF66Q6ZN08 573 aa12.12□□□□□ -0.47
USP3-204ENST00000540797 C1orf162Q8NEQ5 155 aaPredicted RBP12.12□□□□□ -0.47
USP3-204ENST00000540797 TGOLN2O43493 480 aa12.12□□□□□ -0.47
USP3-204ENST00000540797 SULT1A1P50225 295 aa12.12□□□□□ -0.47
USP3-204ENST00000540797 LOXL3P58215 753 aa12.12□□□□□ -0.47
USP3-204ENST00000540797 TRBV5-7A0A0A0MS05 114 aa12.12□□□□□ -0.47
USP3-204ENST00000540797 DUXBA0A1W2PPF3 345 aa12.12□□□□□ -0.47
USP3-204ENST00000540797 FOXH1O75593 365 aa12.12□□□□□ -0.47
USP3-204ENST00000540797 MMP7P09237 267 aaPredicted RBP12.12□□□□□ -0.47
USP3-204ENST00000540797 LY6DQ14210 128 aa12.12□□□□□ -0.47
USP3-204ENST00000540797 MMP26Q9NRE1 261 aa12.12□□□□□ -0.47
USP3-204ENST00000540797 VSIG4Q9Y279 399 aa12.12□□□□□ -0.47
USP3-204ENST00000540797 CACNA1IQ9P0X4 2223 aa12.12□□□□□ -0.47
USP3-204ENST00000540797 HMSDA8MTL9 139 aa12.12□□□□□ -0.47
USP3-204ENST00000540797 SMAD7O15105 426 aaKnown RBP12.12□□□□□ -0.47
USP3-204ENST00000540797 OR2J3O76001 311 aa12.12□□□□□ -0.47
USP3-204ENST00000540797 MBPP02686 304 aaPredicted RBP12.12□□□□□ -0.47
USP3-204ENST00000540797 PF4V1P10720 104 aa12.12□□□□□ -0.47
USP3-204ENST00000540797 C9orf106Q8NAJ2 232 aa12.12□□□□□ -0.47
USP3-204ENST00000540797 ARID1AO14497 2285 aa12.12□□□□□ -0.47
USP3-204ENST00000540797 SBF1O95248 1867 aa12.11□□□□□ -0.47
USP3-204ENST00000540797 THY1P04216 161 aa12.11□□□□□ -0.47
USP3-204ENST00000540797 MOGAT2Q3SYC2 334 aa12.11□□□□□ -0.47
USP3-204ENST00000540797 C10orf113Q5VZT2 155 aa12.11□□□□□ -0.47
USP3-204ENST00000540797 WFDC3Q8IUB2 231 aa12.11□□□□□ -0.47
USP3-204ENST00000540797 ZNF561Q8N587 486 aa12.11□□□□□ -0.47
USP3-204ENST00000540797 OR4P4Q8NGL7 312 aa12.11□□□□□ -0.47
USP3-204ENST00000540797 TBX6O95947 436 aaPredicted RBP12.11□□□□□ -0.47
USP3-204ENST00000540797 BSPH1Q075Z2 132 aa12.11□□□□□ -0.47
USP3-204ENST00000540797 STARD4Q96DR4 205 aa12.11□□□□□ -0.47
USP3-204ENST00000540797 PITPNC1Q9UKF7 332 aa12.11□□□□□ -0.47
USP3-204ENST00000540797 LIPFP07098 398 aa12.11□□□□□ -0.47
USP3-204ENST00000540797 PSG5Q15238 335 aa12.11□□□□□ -0.47
USP3-204ENST00000540797 UBE2V2Q15819 145 aa12.11□□□□□ -0.47
USP3-204ENST00000540797 ZNF645Q8N7E2 425 aa12.11□□□□□ -0.47
USP3-204ENST00000540797 PERPQ96FX8 193 aa12.11□□□□□ -0.47
USP3-204ENST00000540797 FAM103A1Q9BTL3 118 aaKnown RBP12.11□□□□□ -0.47
USP3-204ENST00000540797 RCC2Q9P258 522 aaKnown RBP12.11□□□□□ -0.47
USP3-204ENST00000540797 RALYQ9UKM9 306 aaKnown RBP12.11□□□□□ -0.47
USP3-204ENST00000540797 KLF7O75840 302 aaPredicted RBP12.11□□□□□ -0.47
USP3-204ENST00000540797 TMEM241Q24JQ0 296 aa12.11□□□□□ -0.47
USP3-204ENST00000540797 VAX1Q5SQQ9 334 aa12.11□□□□□ -0.47
USP3-204ENST00000540797 DHRS7BQ6IAN0 325 aaPredicted RBP12.11□□□□□ -0.47
USP3-204ENST00000540797 ABHD12Q8N2K0 398 aa12.11□□□□□ -0.47
USP3-204ENST00000540797 ZNF716A6NP11 495 aa12.1□□□□□ -0.47
USP3-204ENST00000540797 OR5P3Q8WZ94 311 aa12.1□□□□□ -0.47
USP3-204ENST00000540797 NPAS1Q99742 590 aa12.1□□□□□ -0.47
USP3-204ENST00000540797 THSD7BQ9C0I4 1608 aa12.1□□□□□ -0.47
USP3-204ENST00000540797 PIKFYVEQ9Y2I7 2098 aa12.1□□□□□ -0.47
USP3-204ENST00000540797 GATCO43716 136 aaKnown RBP12.1□□□□□ -0.47
USP3-204ENST00000540797 PTGDSP41222 190 aa12.1□□□□□ -0.47
USP3-204ENST00000540797 EWSR1Q01844 656 aaKnown RBP eCLIP12.1□□□□□ -0.47
USP3-204ENST00000540797 PDZD11Q5EBL8 140 aa12.1□□□□□ -0.47
USP3-204ENST00000540797 TEPPQ6URK8 271 aa12.1□□□□□ -0.47
USP3-204ENST00000540797 OR4D10Q8NGI6 311 aa12.1□□□□□ -0.47
USP3-204ENST00000540797 LOC390937A0A1W2PQ73 354 aa12.1□□□□□ -0.47
USP3-204ENST00000540797 HPXP02790 462 aa12.1□□□□□ -0.47
USP3-204ENST00000540797 C4orf17Q53FE4 359 aa12.1□□□□□ -0.47
USP3-204ENST00000540797 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.1□□□□□ -0.47
USP3-204ENST00000540797 FAM222BQ8WU58 562 aa12.1□□□□□ -0.47
USP3-204ENST00000540797 PLA2G10O15496 165 aa12.1□□□□□ -0.47
USP3-204ENST00000540797 IGHV1-2P23083 117 aa12.1□□□□□ -0.47
USP3-204ENST00000540797 ZNF79Q15937 498 aa12.1□□□□□ -0.47
USP3-204ENST00000540797 DCAF12L2Q5VW00 463 aa12.1□□□□□ -0.47
USP3-204ENST00000540797 OR1L6Q8NGR2 347 aa12.1□□□□□ -0.47
USP3-204ENST00000540797 LILRB1Q8NHL6 650 aaPredicted RBP12.1□□□□□ -0.47
USP3-204ENST00000540797 MEGF10Q96KG7 1140 aa12.1□□□□□ -0.47
USP3-204ENST00000540797 LINC00052Q96N35 136 aa12.1□□□□□ -0.47
USP3-204ENST00000540797 CLDN18P56856 261 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 B2MP61769 119 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 SLC25A53Q5H9E4 307 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 UQCC3Q6UW78 93 aa12.09□□□□□ -0.47
USP3-204ENST00000540797 SIGLECL1Q8N7X8 197 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms