RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TECTBQ96PL2 329 aa14.26□□□□□ -0.13
USP28-208ENST00000540438 OR5H1A6NKK0 313 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 HAND1O96004 215 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 CECR9P0C854 216 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 RPL30P62888 115 aaKnown RBP14.25□□□□□ -0.13
USP28-208ENST00000540438 IL13RA2Q14627 380 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 LRTM2Q8N967 370 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 DEFB108BQ8NET1 73 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 OR2Z1Q8NG97 314 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 ZDHHC11Q9H8X9 412 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 TGFBR3Q03167 851 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 MSMPQ1L6U9 139 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 ZNF295-AS1Q8N0V1 137 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 DRAM1Q8N682 238 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 C7orf77A4D0Y5 90 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 ZFP92A6NM28 416 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 ST8SIA5O15466 376 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 GAPDHP04406 335 aaKnown RBP14.25□□□□□ -0.13
USP28-208ENST00000540438 CTRB1P17538 263 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 UCP1P25874 307 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 ERVFRD-1P60508 538 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 IL24Q13007 206 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 CTRB2Q6GPI1 263 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 ADAM5Q6NVV9 412 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 IQCF2Q8IXL9 164 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 VKORC1L1Q8N0U8 176 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 TMEM56Q96MV1 263 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 TMEM56-RWDD3S4R434 201 aa14.25□□□□□ -0.13
USP28-208ENST00000540438 OR5B21A6NL26 309 aa14.24□□□□□ -0.13
USP28-208ENST00000540438 FAM157AC9JC47 383 aa14.24□□□□□ -0.13
USP28-208ENST00000540438 IL2RGP31785 369 aa14.24□□□□□ -0.13
USP28-208ENST00000540438 NRN1LQ496H8 165 aa14.24□□□□□ -0.13
USP28-208ENST00000540438 H1FOOQ8IZA3 346 aaPredicted RBP14.24□□□□□ -0.13
USP28-208ENST00000540438 ZCCHC24Q8N2G6 241 aaKnown RBP14.24□□□□□ -0.13
USP28-208ENST00000540438 GMPPAQ96IJ6 420 aaPredicted RBP14.24□□□□□ -0.13
USP28-208ENST00000540438 GINS3Q9BRX5 216 aa14.24□□□□□ -0.13
USP28-208ENST00000540438 PLEKHF2Q9H8W4 249 aa14.24□□□□□ -0.13
USP28-208ENST00000540438 PLSCR2Q9NRY7 297 aa14.24□□□□□ -0.13
USP28-208ENST00000540438 CARHSP1Q9Y2V2 147 aaKnown RBP14.24□□□□□ -0.13
USP28-208ENST00000540438 MMP24Q9Y5R2 645 aa14.24□□□□□ -0.13
USP28-208ENST00000540438 ZNF585BQ52M93 769 aa14.24□□□□□ -0.13
USP28-208ENST00000540438 C22orf34Q6ZV56 151 aa14.24□□□□□ -0.13
USP28-208ENST00000540438 ZDHHC16Q969W1 377 aa14.24□□□□□ -0.13
USP28-208ENST00000540438 LYRM2Q9NU23 88 aaPredicted RBP14.24□□□□□ -0.13
USP28-208ENST00000540438 CLN8Q9UBY8 286 aa14.24□□□□□ -0.13
USP28-208ENST00000540438 C12orf77C9JDV5 145 aa14.23□□□□□ -0.13
USP28-208ENST00000540438 COX5BP10606 129 aa14.23□□□□□ -0.13
USP28-208ENST00000540438 GPR157Q5UAW9 335 aa14.23□□□□□ -0.13
USP28-208ENST00000540438 TGIF2LYQ8IUE0 185 aa14.23□□□□□ -0.13
USP28-208ENST00000540438 ZFP57Q9NU63 452 aa14.23□□□□□ -0.13
USP28-208ENST00000540438 ZNF343Q6P1L6 599 aa14.23□□□□□ -0.13
USP28-208ENST00000540438 ZNRF1Q8ND25 227 aa14.23□□□□□ -0.13
USP28-208ENST00000540438 Q8NFD4 153 aa14.23□□□□□ -0.13
USP28-208ENST00000540438 C5orf30Q96GV9 206 aa14.23□□□□□ -0.13
USP28-208ENST00000540438 KCNJ16Q9NPI9 418 aa14.23□□□□□ -0.13
USP28-208ENST00000540438 GNG13Q9P2W3 67 aa14.23□□□□□ -0.13
USP28-208ENST00000540438 SNRPEP62304 92 aaKnown RBP14.23□□□□□ -0.13
USP28-208ENST00000540438 MRPL49Q13405 166 aaKnown RBP14.23□□□□□ -0.13
USP28-208ENST00000540438 DUX4L9Q6RFH8 374 aaPredicted RBP14.23□□□□□ -0.13
USP28-208ENST00000540438 WDR31Q8NA23 367 aa14.23□□□□□ -0.13
USP28-208ENST00000540438 SH2D1BO14796 132 aa14.22□□□□□ -0.13
USP28-208ENST00000540438 SPRY3O43610 288 aa14.22□□□□□ -0.13
USP28-208ENST00000540438 H2AFB1P0C5Y9 115 aa14.22□□□□□ -0.13
USP28-208ENST00000540438 SEC11BP0C7V7 166 aa14.22□□□□□ -0.13
USP28-208ENST00000540438 ID3Q02535 119 aa14.22□□□□□ -0.13
USP28-208ENST00000540438 FIP1L1Q6UN15 594 aaKnown RBP14.22□□□□□ -0.13
USP28-208ENST00000540438 SSX7Q7RTT5 188 aa14.22□□□□□ -0.13
USP28-208ENST00000540438 OR13A1Q8NGR1 328 aa14.22□□□□□ -0.13
USP28-208ENST00000540438 SCRT1Q9BWW7 348 aa14.22□□□□□ -0.13
USP28-208ENST00000540438 ASCL3Q9NQ33 180 aa14.22□□□□□ -0.13
USP28-208ENST00000540438 PSG11Q9UQ72 335 aa14.22□□□□□ -0.13
USP28-208ENST00000540438 M0R1B8 84 aa14.22□□□□□ -0.13
USP28-208ENST00000540438 CLDN1O95832 211 aa14.22□□□□□ -0.13
USP28-208ENST00000540438 FGFRL1Q8N441 504 aa14.22□□□□□ -0.13
USP28-208ENST00000540438 PSENENQ9NZ42 101 aa14.22□□□□□ -0.13
USP28-208ENST00000540438 C17orf98A8MV24 154 aa14.21□□□□□ -0.13
USP28-208ENST00000540438 PLXNB1O43157 2135 aa14.21□□□□□ -0.13
USP28-208ENST00000540438 HEXAP06865 529 aa14.21□□□□□ -0.13
USP28-208ENST00000540438 RND3P61587 244 aa14.21□□□□□ -0.13
USP28-208ENST00000540438 COL10A1Q03692 680 aa14.21□□□□□ -0.13
USP28-208ENST00000540438 CLEC12BQ2HXU8 276 aa14.21□□□□□ -0.13
USP28-208ENST00000540438 ZNF497Q6ZNH5 498 aa14.21□□□□□ -0.13
USP28-208ENST00000540438 PLK3Q9H4B4 646 aa14.21□□□□□ -0.13
USP28-208ENST00000540438 CLCF1Q9UBD9 225 aa14.21□□□□□ -0.13
USP28-208ENST00000540438 RNF115Q9Y4L5 304 aa14.21□□□□□ -0.13
USP28-208ENST00000540438 HBZP02008 142 aa14.21□□□□□ -0.13
USP28-208ENST00000540438 EGR1P18146 543 aa14.21□□□□□ -0.13
USP28-208ENST00000540438 EDDM3BP56851 147 aa14.21□□□□□ -0.13
USP28-208ENST00000540438 AKR1C8PQ5T2L2 129 aa14.21□□□□□ -0.13
USP28-208ENST00000540438 DHRS7BQ6IAN0 325 aaPredicted RBP14.21□□□□□ -0.13
USP28-208ENST00000540438 Q6ZT83 130 aa14.21□□□□□ -0.13
USP28-208ENST00000540438 C11orf53Q8IXP5 236 aa14.21□□□□□ -0.13
USP28-208ENST00000540438 CYB561D1Q8N8Q1 229 aa14.21□□□□□ -0.13
USP28-208ENST00000540438 ATPIF1Q9UII2 106 aa14.21□□□□□ -0.13
USP28-208ENST00000540438 WSB1Q9Y6I7 421 aa14.21□□□□□ -0.13
USP28-208ENST00000540438 UBE2L5PA0A1B0GUS4 154 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 LRP5LA4QPB2 252 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 COLCA2A8K830 154 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 H0Y980 276 aa14.2□□□□□ -0.14
USP28-208ENST00000540438 K7N7A8 449 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 136 ms