RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 C1QL1O75973 258 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 TNFRSF1AP19438 455 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 SLC35E4Q6ICL7 350 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 PUSL1Q8N0Z8 303 aaKnown RBP9.13□□□□□ -0.95
CLIP1-213ENST00000540338 LILRB1Q8NHL6 650 aaPredicted RBP9.13□□□□□ -0.95
CLIP1-213ENST00000540338 RXFP4Q8TDU9 374 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 SMIM8Q96KF7 97 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 BIN3Q9NQY0 253 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 ZNF71Q9NQZ8 489 aaPredicted RBP9.13□□□□□ -0.95
CLIP1-213ENST00000540338 TP53TG5Q9Y2B4 290 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 FCGR3BO75015 233 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 DANCRP0C864 163 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 HOXA1P49639 335 aaPredicted RBP9.13□□□□□ -0.95
CLIP1-213ENST00000540338 FLI1Q01543 452 aaPredicted RBP9.13□□□□□ -0.95
CLIP1-213ENST00000540338 SLC38A11Q08AI6 406 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 FOXF2Q12947 444 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 C5orf24Q7Z6I8 188 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 TLNRD1Q9H1K6 362 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 MED13Q9UHV7 2174 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 IGHV2OR16-5A0A0B4J2B6 119 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 GPR37O15354 613 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 RAB11AP62491 216 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 ZNF787Q6DD87 383 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 C1orf87Q8N0U7 546 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 CISD2Q8N5K1 135 aaKnown RBP9.13□□□□□ -0.95
CLIP1-213ENST00000540338 DRAM1Q8N682 238 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 LSM10Q969L4 123 aaKnown RBP9.13□□□□□ -0.95
CLIP1-213ENST00000540338 S100PBPQ96BU1 408 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 ASCL3Q9NQ33 180 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 PLSCR4Q9NRQ2 329 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 CRIM1Q9NZV1 1036 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 OR8U8P0C7N1 319 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 TIMM23BQ5SRD1 257 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 ACP7Q6ZNF0 438 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 ZNF497Q6ZNH5 498 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 ZNF645Q8N7E2 425 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 OR2V2Q96R30 315 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 HSD17B10Q99714 261 aaKnown RBP9.13□□□□□ -0.95
CLIP1-213ENST00000540338 GINS3Q9BRX5 216 aa9.13□□□□□ -0.95
CLIP1-213ENST00000540338 MGST3O14880 152 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 TXNL1O43396 289 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 TAGLN2P37802 199 aaKnown RBP9.12□□□□□ -0.95
CLIP1-213ENST00000540338 ZNF324BQ6AW86 544 aaPredicted RBP9.12□□□□□ -0.95
CLIP1-213ENST00000540338 FGFRL1Q8N441 504 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 Q8NFD4 153 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 LHX4Q969G2 390 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 RNF7Q9UBF6 113 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 FREM1Q5H8C1 2179 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 DOCK10Q96BY6 2186 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 TRBV6-6A0A0A6YYG2 114 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 UBE2L5PA0A1B0GUS4 154 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 IGSF23A1L1A6 192 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 G6PCP35575 357 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 ID4P47928 161 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 IZUMO4Q1ZYL8 232 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 CRIP3Q6Q6R5 217 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 OR4D5Q8NGN0 318 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 MMP24Q9Y5R2 645 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 WSB1Q9Y6I7 421 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 IGHV3OR15-7A0A075B7D8 119 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 C12orf77C9JDV5 145 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 PROB1E7EW31 1015 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 IFNL4K9M1U5 179 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 F12P00748 615 aaPredicted RBP9.12□□□□□ -0.95
CLIP1-213ENST00000540338 AKR1C3P42330 323 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 RPL35P42766 123 aaKnown RBP9.12□□□□□ -0.95
CLIP1-213ENST00000540338 GLIPR1P48060 266 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 H1FXQ92522 213 aaKnown RBP9.12□□□□□ -0.95
CLIP1-213ENST00000540338 SH3BGRL3Q9H299 93 aa9.12□□□□□ -0.95
CLIP1-213ENST00000540338 RBFOX3A6NFN3 312 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 ST8SIA5O15466 376 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 SCAF4O95104 1147 aaKnown RBP9.11□□□□□ -0.95
CLIP1-213ENST00000540338 RAB7AP51149 207 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 ZNF146Q15072 292 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 CBLN2Q8IUK8 224 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 SFXN3Q9BWM7 321 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 C16orf97H3BN30 126 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 IGHV3-13P01766 116 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 IGHV3-7P01780 117 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 MBP02144 154 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 RUNX1Q01196 453 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 SDSLQ96GA7 329 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 FAM74A7A6NL05 159 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 CYB5BO43169 146 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 GLRXP35754 106 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 ATP6V1FQ16864 119 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 ZNF674Q2M3X9 581 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 FAM74A3Q4VXF1 159 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 TCTEX1D1Q8N7M0 179 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 SNX22Q96L94 193 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 USB1Q9BQ65 265 aaKnown RBP9.11□□□□□ -0.95
CLIP1-213ENST00000540338 CABLES2Q9BTV7 478 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 PSMB3P49720 205 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 Q6P435 159 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 ATRAIDQ6UW56 229 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 ITLN1Q8WWA0 313 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 R3HDM4Q96D70 268 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 GFOD1Q9NXC2 390 aa9.11□□□□□ -0.95
CLIP1-213ENST00000540338 LY86O95711 162 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 SPP1P10451 314 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms