RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 PAX5Q02548 391 aa11.11□□□□□ -0.63
MSH6-210ENST00000540021 PRAMEF5Q5TYX0 476 aa11.11□□□□□ -0.63
MSH6-210ENST00000540021 PRAMEF6Q5VXH4 476 aa11.11□□□□□ -0.63
MSH6-210ENST00000540021 TUSC5Q8IXB3 177 aa11.11□□□□□ -0.63
MSH6-210ENST00000540021 KDF1Q8NAX2 398 aaPredicted RBP11.11□□□□□ -0.63
MSH6-210ENST00000540021 BTF3L4Q96K17 158 aa11.11□□□□□ -0.63
MSH6-210ENST00000540021 TXN2Q99757 166 aa11.11□□□□□ -0.63
MSH6-210ENST00000540021 A0A1B0GU03 582 aa11.11□□□□□ -0.63
MSH6-210ENST00000540021 ERVK-16P61578 105 aa11.11□□□□□ -0.63
MSH6-210ENST00000540021 GNG3P63215 75 aa11.11□□□□□ -0.63
MSH6-210ENST00000540021 ACOT6Q3I5F7 207 aaPredicted RBP11.11□□□□□ -0.63
MSH6-210ENST00000540021 PARLQ9H300 379 aa11.11□□□□□ -0.63
MSH6-210ENST00000540021 GRIFINA4D1Z8 144 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 LRP5LA4QPB2 252 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 M0R143 59 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 CD55P08174 381 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 MGST1P10620 155 aaKnown RBP11.1□□□□□ -0.63
MSH6-210ENST00000540021 CDC34P49427 236 aaPredicted RBP11.1□□□□□ -0.63
MSH6-210ENST00000540021 THBS3P49746 956 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 UCP3P55916 312 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 CNEP1R1Q8N9A8 125 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 RIMS4Q9H426 269 aaPredicted RBP11.1□□□□□ -0.63
MSH6-210ENST00000540021 H0Y980 276 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 TMEM50AO95807 157 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 C10orf128Q5T292 105 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 SLC23A3Q6PIS1 610 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 THADAQ6YHU6 1953 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 TPRX1Q8N7U7 411 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 OR4A16Q8NH70 328 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 ABHD5Q8WTS1 349 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 TAF15Q92804 592 aaKnown RBP eCLIP11.1□□□□□ -0.63
MSH6-210ENST00000540021 TBX15Q96SF7 602 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 CTDSP1Q9GZU7 261 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 ZNF391Q9UJN7 358 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 ATP23Q9Y6H3 246 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 CNOT1A5YKK6 2376 aaKnown RBP11.1□□□□□ -0.63
MSH6-210ENST00000540021 ARGFXA6NJG6 315 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 CDIPTO14735 213 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 SYNGR3O43761 229 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 ACTL6BO94805 426 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 KCNMB1Q16558 191 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 TMEM183AQ8IXX5 376 aa11.1□□□□□ -0.63
MSH6-210ENST00000540021 CISD1Q9NZ45 108 aaKnown RBP11.1□□□□□ -0.63
MSH6-210ENST00000540021 SPTBN2O15020 2390 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 A0A087WWC5 75 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 A0A1W2PQM1 296 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 MPLP40238 635 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 FGF12P61328 243 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 NUFIP2Q7Z417 695 aaKnown RBP11.09□□□□□ -0.63
MSH6-210ENST00000540021 C1QL4Q86Z23 238 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 CADM4Q8NFZ8 388 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 GATAD1Q8WUU5 269 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 PMCHP20382 165 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 PMELP40967 661 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 DPPA3Q6W0C5 159 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 SGMS2Q8NHU3 365 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 ZNF552Q9H707 407 aaPredicted RBP11.09□□□□□ -0.63
MSH6-210ENST00000540021 SDF2L1Q9HCN8 221 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 hCG_38984A0A1B0GV85 526 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 DUXBA0A1W2PPF3 345 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 AQP7O14520 342 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 NDUFB4O95168 129 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 RFPL3SP0C7P2 107 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 SMRP1Q8NCR6 262 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 OR5D13Q8NGL4 314 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 KCNE4Q8WWG9 221 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 TMEM54Q969K7 222 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 NABP1Q96AH0 204 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 TECTBQ96PL2 329 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 MTCH1Q9NZJ7 389 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 ANAPC10Q9UM13 185 aa11.09□□□□□ -0.63
MSH6-210ENST00000540021 A0A0G2JMM0 328 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 A0A1W2PPB8 328 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 A0A1W2PRS3 328 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 KIR3DP1A8MWS1 328 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 KIAA1324LA8MWY0 1029 aaPredicted RBP11.08□□□□□ -0.64
MSH6-210ENST00000540021 FAM157AC9JC47 383 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 SH2D1BO14796 132 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 SELEP16581 610 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 UCP1P25874 307 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 CEBPDP49716 269 aaPredicted RBP11.08□□□□□ -0.64
MSH6-210ENST00000540021 CNN1P51911 297 aaKnown RBP11.08□□□□□ -0.64
MSH6-210ENST00000540021 TAS2R60P59551 318 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 UNQ6494/PRO21346Q6UXR6 183 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 DTX1Q86Y01 620 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 MRGPRDQ8TDS7 321 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 NANOS1Q8WY41 292 aaKnown RBP11.08□□□□□ -0.64
MSH6-210ENST00000540021 UHRF2Q96PU4 802 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 HS3ST6Q96QI5 342 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 RTL8AQ9BWD3 113 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 DEFB127Q9H1M4 99 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 FZR1Q9UM11 496 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 ZNF318Q5VUA4 2279 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 POLEQ07864 2286 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 TRAV38-1A0A0B4J264 116 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 ZIC3O60481 467 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 SRD5A2P31213 254 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 SLC35B1P78383 322 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 CARFQ8N187 725 aa11.08□□□□□ -0.64
MSH6-210ENST00000540021 CMTM2Q8TAZ6 248 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms