RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 DEGS1O15121 323 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 NGFP01138 241 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 SRD5A2P31213 254 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 OTX2P32243 289 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 CHRNA7P36544 502 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 RPL23P62829 140 aaKnown RBP9.58□□□□□ -0.88
SYNE1-237ENST00000539504 ZNF124Q15973 351 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 IGFBP7Q16270 282 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 CEACAM21Q3KPI0 293 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 Q6ZS49 121 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 CYP2G1PQ6ZSU1 146 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-237ENST00000539504 HAPLN4Q86UW8 402 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 GATAD1Q8WUU5 269 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 TMEM18Q96B42 140 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 DDA1Q9BW61 102 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 FGF23Q9GZV9 251 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-237ENST00000539504 PARLQ9H300 379 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 PLA2G3Q9NZ20 509 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 SIRPB1O00241 398 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 KBTBD11O94819 623 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 PFN1P07737 140 aaKnown RBP9.58□□□□□ -0.88
SYNE1-237ENST00000539504 UMODP07911 640 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 GZMHP20718 246 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 G0S2P27469 103 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 ZNF324BQ6AW86 544 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-237ENST00000539504 RPP25LQ8N5L8 163 aaKnown RBP9.58□□□□□ -0.88
SYNE1-237ENST00000539504 KCNE4Q8WWG9 221 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 IMMP1LQ96LU5 166 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 ATG101Q9BSB4 218 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 PRDM14Q9GZV8 571 aa9.58□□□□□ -0.88
SYNE1-237ENST00000539504 ANKRD30BLA7E2S9 258 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 A8MWP6 167 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 ZNF709Q8N972 641 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 OR2T10Q8NGZ9 312 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 THOC3Q96J01 351 aaKnown RBP9.57□□□□□ -0.88
SYNE1-237ENST00000539504 NOL4LQ96MY1 436 aaPredicted RBP9.57□□□□□ -0.88
SYNE1-237ENST00000539504 DUSP23Q9BVJ7 150 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 PRRG4Q9BZD6 226 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 CFAP54Q96N23 3096 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 DNPH1O43598 174 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 KRASP01116 189 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 IGKV1-39P01597 117 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 IGKV1-5P01602 117 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 IGKV1D-39P04432 117 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 SLC10A1Q14973 349 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 FAM58AQ8N1B3 248 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 NDUFAF3Q9BU61 184 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 REPIN1Q9BWE0 567 aaKnown RBP9.57□□□□□ -0.88
SYNE1-237ENST00000539504 CCL4P13236 92 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 MLF1P58340 268 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 FAM3BP58499 235 aaPredicted RBP9.57□□□□□ -0.88
SYNE1-237ENST00000539504 RIPPLY2Q5TAB7 128 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 GGNQ86UU5 652 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 OR51G1Q8NGK1 321 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 OR10G9Q8NGN4 311 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 OR10G7Q8NGN6 311 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 C2orf88Q9BSF0 95 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 TMEM9BQ9NQ34 198 aa9.57□□□□□ -0.88
SYNE1-237ENST00000539504 PAGE4O60829 102 aa9.56□□□□□ -0.88
SYNE1-237ENST00000539504 HRASP01112 189 aa9.56□□□□□ -0.88
SYNE1-237ENST00000539504 IGKV1D-33P01593 117 aa9.56□□□□□ -0.88
SYNE1-237ENST00000539504 IGKV1-33P01594 117 aa9.56□□□□□ -0.88
SYNE1-237ENST00000539504 SPSB4Q96A44 273 aa9.56□□□□□ -0.88
SYNE1-237ENST00000539504 LIN7CQ9NUP9 197 aaKnown RBP9.56□□□□□ -0.88
SYNE1-237ENST00000539504 ARHGAP21Q5T5U3 1957 aa9.56□□□□□ -0.88
SYNE1-237ENST00000539504 DOCK7Q96N67 2140 aa9.56□□□□□ -0.88
SYNE1-237ENST00000539504 A0A0U1RQK1 487 aa9.56□□□□□ -0.88
SYNE1-237ENST00000539504 KIAA1324LA8MWY0 1029 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-237ENST00000539504 GYPAP02724 150 aa9.56□□□□□ -0.88
SYNE1-237ENST00000539504 NUBP1P53384 320 aa9.56□□□□□ -0.88
SYNE1-237ENST00000539504 B3GALT5-AS1P59052 145 aa9.56□□□□□ -0.88
SYNE1-237ENST00000539504 FFAR4Q5NUL3 377 aa9.56□□□□□ -0.88
SYNE1-237ENST00000539504 AGBL5Q8NDL9 886 aa9.56□□□□□ -0.88
SYNE1-237ENST00000539504 RAB24Q969Q5 203 aa9.56□□□□□ -0.88
SYNE1-237ENST00000539504 APOBEC3DQ96AK3 386 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-237ENST00000539504 DLL3Q9NYJ7 618 aa9.56□□□□□ -0.88
SYNE1-237ENST00000539504 TRAV24A0A0B4J272 114 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 ZNF705FA8MVS1 300 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-237ENST00000539504 MKRN2OSH3BPM6 223 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 PDGFBP01127 241 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-237ENST00000539504 GCGP01275 180 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 ZNF705DP0CH99 300 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-237ENST00000539504 ZNF705BP0CI00 300 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-237ENST00000539504 EPHA8P29322 1005 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-237ENST00000539504 FOLR3P41439 243 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 PLP2Q04941 152 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 SPATA46Q5T0L3 261 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 FAM78BQ5VT40 261 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 CST9LP1Q5W188 147 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 ZNF808Q8N4W9 903 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-237ENST00000539504 DNASE2BQ8WZ79 361 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 LSM10Q969L4 123 aaKnown RBP9.55□□□□□ -0.88
SYNE1-237ENST00000539504 WDR54Q9H977 334 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 CACNA1DQ01668 2161 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 KIAA2026Q5HYC2 2103 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 LOC102723996A0A087X1L8 192 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 SLC25A6P12236 298 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 DEFA4P12838 97 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 EGR1P18146 543 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms