RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 LHFPL6Q9Y693 200 aa5.72□□□□□ -1.49
USP28-207ENST00000538475 PDE4DIPQ5VU43 2346 aa5.72□□□□□ -1.49
USP28-207ENST00000538475 TNRC6AQ8NDV7 1962 aaKnown RBP5.71□□□□□ -1.49
USP28-207ENST00000538475 PCDH15Q96QU1 1955 aa5.71□□□□□ -1.49
USP28-207ENST00000538475 TNFSF12-TNFSF13A0A0A6YY99 330 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 LOC101059948A0A1B0GTJ6 334 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 LRRC3CA6NJW4 275 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 ZNF814B7Z6K7 855 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 C17orf112F2Z3M2 114 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 ADAM20O43506 726 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 RAMP3O60896 148 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 ZNF253O75346 499 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 TUSC2O75896 110 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 CST7O76096 145 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 TNFSF15O95150 251 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 IGKV3-11P04433 115 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 FCGR2AP12318 317 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 TMEM11P17152 192 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 COX5AP20674 150 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 CD1BP29016 333 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 OTX1P32242 354 aaPredicted RBP5.71□□□□□ -1.5
USP28-207ENST00000538475 THBS3P49746 956 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 EFNA3P52797 238 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 SLURP1P55000 103 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 CLDN15P56746 228 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 YPEL5P62699 121 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 CCL7P80098 99 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 MRPS34P82930 218 aaKnown RBP5.71□□□□□ -1.5
USP28-207ENST00000538475 RUNX1Q01196 453 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 MALLQ13021 153 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 SMAD4Q13485 552 aaKnown RBP5.71□□□□□ -1.5
USP28-207ENST00000538475 SQSTM1Q13501 440 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 TRA2AQ13595 282 aaKnown RBP eCLIP5.71□□□□□ -1.5
USP28-207ENST00000538475 ZNF726P1Q15940 193 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 HIST3H3Q16695 136 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 PHLDA2Q53GA4 152 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 LRRC10Q5BKY1 277 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 FAM162BQ5T6X4 162 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 ZNF776Q68DI1 518 aaPredicted RBP5.71□□□□□ -1.5
USP28-207ENST00000538475 LCN15Q6UWW0 184 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 FOXL2NBQ6ZUU3 175 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 Q6ZWC4 215 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 PRSS41Q7RTY9 318 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 C6orf201Q7Z4U5 140 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 PRSS58Q8IYP2 241 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 GJC3Q8NFK1 279 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 OR4C5Q8NGB2 326 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 DOK4Q8TEW6 326 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 ZNF721Q8TF20 911 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 TAF15Q92804 592 aaKnown RBP eCLIP5.71□□□□□ -1.5
USP28-207ENST00000538475 C1orf159Q96HA4 380 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 PGAM5Q96HS1 289 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 GNB1LQ9BYB4 327 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 KRTAP4-11Q9BYQ6 195 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 CSTL1Q9H114 145 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 NXF5Q9H1B4 397 aaKnown RBP5.71□□□□□ -1.5
USP28-207ENST00000538475 LIME1Q9H400 295 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 UBE2ZQ9H832 354 aaPredicted RBP5.71□□□□□ -1.5
USP28-207ENST00000538475 PNRC2Q9NPJ4 139 aaKnown RBP5.71□□□□□ -1.5
USP28-207ENST00000538475 ZNF319Q9P2F9 582 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 FBXL7Q9UJT9 491 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 POLR1DQ9Y2S0 133 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 SEC16AO15027 2179 aa5.71□□□□□ -1.5
USP28-207ENST00000538475 TRBV6-6A0A0A6YYG2 114 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 IGHV2-26A0A0B4J1V2 119 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 MDFIC2A0A1B0GVS7 189 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 A0A1W2PP11 408 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 CCDC85CA6NKD9 419 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 VSTM2BA6NLU5 285 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 C17orf105B2RV13 164 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 TMEM150CB9EJG8 249 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 DIRC3C9JPN6 131 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 CCL16O15467 120 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 SYNGR2O43760 224 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 NDUFB8O95169 186 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 GPX1P07203 203 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 SCGB1A1P11684 91 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 HNRNPA2B1P22626 353 aaKnown RBP5.7□□□□□ -1.5
USP28-207ENST00000538475 OMGP23515 440 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 GCH1P30793 250 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 GNRHRP30968 328 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 CEACAM3P40198 252 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 GUCA1AP43080 201 aaPredicted RBP5.7□□□□□ -1.5
USP28-207ENST00000538475 GABRA2P47869 451 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 REG1BP48304 166 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 PRRX1P54821 245 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 CLRN1P58418 232 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 RHOBP62745 196 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 C17orf67Q0P5P2 114 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 ZNF154Q13106 437 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 CXorf66Q5JRM2 361 aaPredicted RBP5.7□□□□□ -1.5
USP28-207ENST00000538475 SPIN3Q5JUX0 258 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 MEX3BQ6ZN04 569 aaKnown RBP5.7□□□□□ -1.5
USP28-207ENST00000538475 FAM57BQ71RH2 274 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 TBC1D26Q86UD7 250 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 MYPOPQ86VE0 399 aaPredicted RBP5.7□□□□□ -1.5
USP28-207ENST00000538475 WDFY1Q8IWB7 410 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 UEVLDQ8IX04 471 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 SAXO1Q8IYX7 474 aa5.7□□□□□ -1.5
USP28-207ENST00000538475 LYG1Q8N1E2 194 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms