RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 A0A0D9SG52 128 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 A0A1B0GWJ7 208 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 RPS10-NUDT3A0A1W2PQS6 291 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 A6NLC8 198 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 DIRAS3O95661 229 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 CTXN2P0C2S0 81 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 RRASP10301 218 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 RCC1P18754 421 aaPredicted RBP9.95□□□□□ -0.82
CLIP1-208ENST00000537004 IL2RGP31785 369 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 SELENOVP59797 346 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 ZNF345Q14585 488 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 ZNF880Q6PDB4 577 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 YAE1D1Q9NRH1 226 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 TREM2Q9NZC2 230 aa9.95□□□□□ -0.82
CLIP1-208ENST00000537004 DSCAML1Q8TD84 2053 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 TANC2Q9HCD6 1990 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 C17orf100A8MU93 164 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 WNT9BO14905 357 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 CD5LO43866 347 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 IGHV3-13P01766 116 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 OR5AC1P0C628 307 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 WDR82Q6UXN9 313 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 CCDC71LQ8N9Z2 235 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 OR11L1Q8NGX0 322 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 PLPPR1Q8TBJ4 325 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 GALNT14Q96FL9 552 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 C2orf50Q96LR7 162 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 UFSP2Q9NUQ7 469 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 OR14J1Q9UGF5 321 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 RNF222A6NCQ9 220 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 NDUFS8O00217 210 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 SPRY3O43610 288 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 TUSC2O75896 110 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 OR2F2O95006 317 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 HAND1O96004 215 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 IGHV4-31P0DP07 118 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 RAB14P61106 215 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 HLA-DRB3P79483 266 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 MZT1Q08AG7 82 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 OR2F1Q13607 317 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 TMEM187Q14656 261 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 SP6Q3SY56 376 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 SPRNQ5BIV9 151 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 ZNF497Q6ZNH5 498 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 ACOT7LQ6ZUV0 252 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 KCNRGQ8N5I3 272 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 OR2Z1Q8NG97 314 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 OR4A4PQ8NGN8 299 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 SUCNR1Q9BXA5 334 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 DYSFO75923 2080 aa9.94□□□□□ -0.82
CLIP1-208ENST00000537004 MALRD1Q5VYJ5 2156 aa9.93□□□□□ -0.82
CLIP1-208ENST00000537004 POM121CA8CG34 1229 aa9.93□□□□□ -0.82
CLIP1-208ENST00000537004 ZNF16P17020 682 aaPredicted RBP9.93□□□□□ -0.82
CLIP1-208ENST00000537004 GNRHRP30968 328 aa9.93□□□□□ -0.82
CLIP1-208ENST00000537004 KCNJ3P48549 501 aa9.93□□□□□ -0.82
CLIP1-208ENST00000537004 CEBPDP49716 269 aaPredicted RBP9.93□□□□□ -0.82
CLIP1-208ENST00000537004 ACP7Q6ZNF0 438 aa9.93□□□□□ -0.82
CLIP1-208ENST00000537004 MOB1BQ7L9L4 216 aa9.93□□□□□ -0.82
CLIP1-208ENST00000537004 PRIMA1Q86XR5 153 aa9.93□□□□□ -0.82
CLIP1-208ENST00000537004 INO80EQ8NBZ0 244 aaPredicted RBP9.93□□□□□ -0.82
CLIP1-208ENST00000537004 OR10Z1Q8NGY1 313 aa9.93□□□□□ -0.82
CLIP1-208ENST00000537004 SECTM1Q8WVN6 248 aa9.93□□□□□ -0.82
CLIP1-208ENST00000537004 MSI2Q96DH6 328 aaKnown RBP9.93□□□□□ -0.82
CLIP1-208ENST00000537004 RNF126Q9BV68 326 aa9.93□□□□□ -0.82
CLIP1-208ENST00000537004 PCDHB10Q9UN67 800 aa9.93□□□□□ -0.82
CLIP1-208ENST00000537004 COL6A5A8TX70 2615 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 TRBV6-7A0A0A0MS04 114 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 TRAV39A0A0B4J263 110 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 IGKV1D-13A0A0B4J2D9 117 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 hCG_1807616A0A1W2PRN6 198 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 TOR1AO14656 332 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 NDUFA2O43678 99 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 IFNA21P01568 189 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 IGKV1-13P0DP09 117 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 HOXA4Q00056 320 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-208ENST00000537004 IL15RAQ13261 267 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 FAM185AQ8N0U4 392 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 GAPTQ8N292 157 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 ZNF565Q8N9K5 539 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 OR10J5Q8NHC4 309 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 DCUN1D4Q92564 292 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 RBPMSQ93062 196 aaKnown RBP9.92□□□□□ -0.82
CLIP1-208ENST00000537004 KIRREL1Q96J84 757 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 CABLES2Q9BTV7 478 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 ZC4H2Q9NQZ6 224 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 GSKIPQ9P0R6 139 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 GLS2Q9UI32 602 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 KANTRA0A1W2PQU2 76 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 H0YIZ8 118 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 TSPAN4O14817 238 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 MPPED1O15442 326 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 PSPNO60542 156 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 IGHV1-46P01743 117 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 IAH1Q2TAA2 248 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-208ENST00000537004 SMIM21Q3B7S5 101 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 GGNBP1Q5YKI7 109 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 ALKAL2Q6UX46 152 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 LIAT1Q6ZQX7 453 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 ZNF818PQ6ZRF7 136 aa9.92□□□□□ -0.82
CLIP1-208ENST00000537004 LDLRAD3Q86YD5 345 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms