RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 EPG5Q9HCE0 2579 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 A0A1B0GW55 424 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 MEX3AA1L020 520 aaKnown RBP17.22■□□□□ 0.35
VPS28-209ENST00000528142 SCGB1D2O95969 90 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 DUX4L2P0CJ85 424 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 DUX4L3P0CJ86 424 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 DUX4L4P0CJ87 422 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 DUX4L5P0CJ88 424 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 DUX4L6P0CJ89 424 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 DUX4L7P0CJ90 424 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 CGB3P0DN86 165 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 CGB7P0DN87 165 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 APOBEC3AP31941 199 aaPredicted RBP17.22■□□□□ 0.35
VPS28-209ENST00000528142 RAB14P61106 215 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 SMCO1Q147U7 214 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 DUX4L9Q6RFH8 374 aaPredicted RBP17.22■□□□□ 0.35
VPS28-209ENST00000528142 ZNF788Q6ZQV5 615 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 ZBTB34Q8NCN2 500 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 DEFB108BQ8NET1 73 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 NINJ1Q92982 152 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 EGLN1Q9GZT9 426 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 CYTL1Q9NRR1 136 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 ZFP57Q9NU63 452 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 DUX4Q9UBX2 424 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 AUP1Q9Y679 476 aa17.22■□□□□ 0.35
VPS28-209ENST00000528142 F5H0A9 414 aaPredicted RBP17.21■□□□□ 0.35
VPS28-209ENST00000528142 SIAH2O43255 324 aa17.21■□□□□ 0.35
VPS28-209ENST00000528142 PLAUP00749 431 aa17.21■□□□□ 0.35
VPS28-209ENST00000528142 EIF4EBP1Q13541 118 aaPredicted RBP17.21■□□□□ 0.35
VPS28-209ENST00000528142 MSMO1Q15800 293 aa17.21■□□□□ 0.35
VPS28-209ENST00000528142 CA5BP1Q8WTZ4 195 aa17.21■□□□□ 0.35
VPS28-209ENST00000528142 C5orf30Q96GV9 206 aa17.21■□□□□ 0.35
VPS28-209ENST00000528142 ZNF665Q9H7R5 613 aa17.21■□□□□ 0.35
VPS28-209ENST00000528142 SAP30LQ9HAJ7 183 aa17.21■□□□□ 0.35
VPS28-209ENST00000528142 RNF150Q9ULK6 438 aa17.21■□□□□ 0.35
VPS28-209ENST00000528142 ZFYVE26Q68DK2 2539 aa17.21■□□□□ 0.35
VPS28-209ENST00000528142 LRRC30A6NM36 301 aa17.21■□□□□ 0.35
VPS28-209ENST00000528142 ADAM20O43506 726 aa17.21■□□□□ 0.35
VPS28-209ENST00000528142 SERPINE2P07093 398 aa17.21■□□□□ 0.35
VPS28-209ENST00000528142 STOML3Q8TAV4 291 aa17.21■□□□□ 0.35
VPS28-209ENST00000528142 C14orf79Q96F83 325 aa17.21■□□□□ 0.35
VPS28-209ENST00000528142 LRRC46Q96FV0 321 aa17.21■□□□□ 0.35
VPS28-209ENST00000528142 CCL13Q99616 98 aa17.21■□□□□ 0.35
VPS28-209ENST00000528142 SPIN2AQ99865 258 aa17.21■□□□□ 0.35
VPS28-209ENST00000528142 SPIN2BQ9BPZ2 258 aa17.21■□□□□ 0.35
VPS28-209ENST00000528142 FAM234AQ9H0X4 552 aa17.21■□□□□ 0.35
VPS28-209ENST00000528142 OR2D2Q9H210 308 aa17.21■□□□□ 0.35
VPS28-209ENST00000528142 KCNJ16Q9NPI9 418 aa17.21■□□□□ 0.35
VPS28-209ENST00000528142 IGHV3-43A0A0B4J1X8 118 aa17.2■□□□□ 0.34
VPS28-209ENST00000528142 ST8SIA3O43173 380 aa17.2■□□□□ 0.34
VPS28-209ENST00000528142 IGKV1-39P01597 117 aa17.2■□□□□ 0.34
VPS28-209ENST00000528142 GYPAP02724 150 aa17.2■□□□□ 0.34
VPS28-209ENST00000528142 IGKV1D-39P04432 117 aa17.2■□□□□ 0.34
VPS28-209ENST00000528142 IGHV3-43DP0DP04 118 aa17.2■□□□□ 0.34
VPS28-209ENST00000528142 EDDM3BP56851 147 aa17.2■□□□□ 0.34
VPS28-209ENST00000528142 ZNF585BQ52M93 769 aa17.2■□□□□ 0.34
VPS28-209ENST00000528142 OR6C3Q9NZP0 311 aa17.2■□□□□ 0.34
VPS28-209ENST00000528142 RNF115Q9Y4L5 304 aa17.2■□□□□ 0.34
VPS28-209ENST00000528142 POMT1Q9Y6A1 747 aa17.2■□□□□ 0.34
VPS28-209ENST00000528142 PIGBOS1A0A0B4J2F0 54 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 E5RGE8 158 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 F2RL2O00254 374 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 NMBP08949 121 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 RPL12P30050 165 aaKnown RBP17.19■□□□□ 0.34
VPS28-209ENST00000528142 UQCRFS1P47985 274 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 DMBX1Q8NFW5 382 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 PHYHIPLQ96FC7 376 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 AGMATQ9BSE5 352 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 MS4A5Q9H3V2 200 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 PLEKHF2Q9H8W4 249 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 NSG2Q9Y328 171 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 KIAA2026Q5HYC2 2103 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 ICE1Q9Y2F5 2266 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 B9A039 149 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 TMEM178BH3BS89 294 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 LGALS8O00214 317 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 SIGLEC5O15389 551 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 LOXP28300 417 aaPredicted RBP17.19■□□□□ 0.34
VPS28-209ENST00000528142 TFF3Q07654 80 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 FAM216BQ8N7L0 139 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 GALNT11Q8NCW6 608 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 C11orf1Q9H5F2 150 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 PLEKHA2Q9HB19 425 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 DYNLRB1Q9NP97 96 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 LIN7CQ9NUP9 197 aaKnown RBP17.19■□□□□ 0.34
VPS28-209ENST00000528142 CISD1Q9NZ45 108 aaKnown RBP17.19■□□□□ 0.34
VPS28-209ENST00000528142 JPT1Q9UK76 154 aa17.19■□□□□ 0.34
VPS28-209ENST00000528142 A0A0G2JRQ6 117 aa17.18■□□□□ 0.34
VPS28-209ENST00000528142 LEUTXA8MZ59 168 aa17.18■□□□□ 0.34
VPS28-209ENST00000528142 LOXL3P58215 753 aa17.18■□□□□ 0.34
VPS28-209ENST00000528142 RCL1Q9Y2P8 373 aaKnown RBP17.18■□□□□ 0.34
VPS28-209ENST00000528142 CACNA1DQ01668 2161 aa17.18■□□□□ 0.34
VPS28-209ENST00000528142 ANKRD34BA5PLL1 514 aa17.17■□□□□ 0.34
VPS28-209ENST00000528142 RNF212BA8MTL3 300 aa17.17■□□□□ 0.34
VPS28-209ENST00000528142 DEFB108AA8MXU0 73 aa17.17■□□□□ 0.34
VPS28-209ENST00000528142 YPEL1O60688 119 aa17.17■□□□□ 0.34
VPS28-209ENST00000528142 C17orf58Q2M2W7 97 aa17.17■□□□□ 0.34
VPS28-209ENST00000528142 MORN2Q502X0 79 aa17.17■□□□□ 0.34
VPS28-209ENST00000528142 GPR146Q96CH1 333 aa17.17■□□□□ 0.34
VPS28-209ENST00000528142 ABHD14BQ96IU4 210 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms