RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 Q8N402 240 aa3.82□□□□□ -1.8
NUP54-215ENST00000514313 IGF2BP2-AS1Q96M15 143 aa3.82□□□□□ -1.8
NUP54-215ENST00000514313 OR7D2Q96RA2 312 aa3.82□□□□□ -1.8
NUP54-215ENST00000514313 DHRS9Q9BPW9 319 aa3.82□□□□□ -1.8
NUP54-215ENST00000514313 DERL2Q9GZP9 239 aa3.82□□□□□ -1.8
NUP54-215ENST00000514313 A0A1W2PNN7 141 aa3.81□□□□□ -1.8
NUP54-215ENST00000514313 M0QZ92 97 aa3.81□□□□□ -1.8
NUP54-215ENST00000514313 C8orf88P0DMB2 117 aa3.81□□□□□ -1.8
NUP54-215ENST00000514313 PPP1CCP36873 323 aaKnown RBP3.81□□□□□ -1.8
NUP54-215ENST00000514313 PDK2Q15119 407 aa3.81□□□□□ -1.8
NUP54-215ENST00000514313 HS3ST5Q8IZT8 346 aa3.81□□□□□ -1.8
NUP54-215ENST00000514313 Q8NAQ8 132 aa3.81□□□□□ -1.8
NUP54-215ENST00000514313 TLCD1Q96CP7 247 aa3.81□□□□□ -1.8
NUP54-215ENST00000514313 SLC25A44Q96H78 314 aaPredicted RBP3.81□□□□□ -1.8
NUP54-215ENST00000514313 MED18Q9BUE0 208 aa3.81□□□□□ -1.8
NUP54-215ENST00000514313 TIPINQ9BVW5 301 aa3.81□□□□□ -1.8
NUP54-215ENST00000514313 GNB1LQ9BYB4 327 aa3.81□□□□□ -1.8
NUP54-215ENST00000514313 CHD2O14647 1828 aaKnown RBP3.81□□□□□ -1.8
NUP54-215ENST00000514313 ADCY9O60503 1353 aa3.8□□□□□ -1.8
NUP54-215ENST00000514313 SLC16A4O15374 487 aa3.8□□□□□ -1.8
NUP54-215ENST00000514313 DENRO43583 198 aaKnown RBP3.8□□□□□ -1.8
NUP54-215ENST00000514313 SLC25A20O43772 301 aa3.8□□□□□ -1.8
NUP54-215ENST00000514313 OR12D1P0DN82 309 aa3.8□□□□□ -1.8
NUP54-215ENST00000514313 HSPA9P38646 679 aaKnown RBP3.8□□□□□ -1.8
NUP54-215ENST00000514313 OR1E2P47887 323 aa3.8□□□□□ -1.8
NUP54-215ENST00000514313 LINC00313P59037 77 aa3.8□□□□□ -1.8
NUP54-215ENST00000514313 TMEM267Q0VDI3 215 aaPredicted RBP3.8□□□□□ -1.8
NUP54-215ENST00000514313 CST9Q5W186 159 aa3.8□□□□□ -1.8
NUP54-215ENST00000514313 LCN8Q6JVE9 175 aa3.8□□□□□ -1.8
NUP54-215ENST00000514313 ATP5L2Q7Z4Y8 100 aa3.8□□□□□ -1.8
NUP54-215ENST00000514313 ZFAND2AQ8N6M9 145 aa3.8□□□□□ -1.8
NUP54-215ENST00000514313 NATD1Q8N6N6 113 aa3.8□□□□□ -1.8
NUP54-215ENST00000514313 ABHD14BQ96IU4 210 aa3.8□□□□□ -1.8
NUP54-215ENST00000514313 MED28Q9H204 178 aa3.8□□□□□ -1.8
NUP54-215ENST00000514313 FGFR1OP2Q9NVK5 253 aa3.8□□□□□ -1.8
NUP54-215ENST00000514313 POLR3HQ9Y535 204 aaPredicted RBP3.8□□□□□ -1.8
NUP54-215ENST00000514313 NPATQ14207 1427 aa3.79□□□□□ -1.8
NUP54-215ENST00000514313 NID2Q14112 1375 aa3.79□□□□□ -1.8
NUP54-215ENST00000514313 ZBED9Q6R2W3 1325 aa3.79□□□□□ -1.8
NUP54-215ENST00000514313 COL4A4P53420 1690 aaPredicted RBP3.79□□□□□ -1.8
NUP54-215ENST00000514313 A0A1B0GU33 70 aa3.79□□□□□ -1.8
NUP54-215ENST00000514313 COPEO14579 308 aa3.79□□□□□ -1.8
NUP54-215ENST00000514313 KRT7P08729 469 aa3.79□□□□□ -1.8
NUP54-215ENST00000514313 IHHQ14623 411 aa3.79□□□□□ -1.8
NUP54-215ENST00000514313 PYDC2Q56P42 97 aa3.79□□□□□ -1.8
NUP54-215ENST00000514313 TM2D3Q9BRN9 247 aa3.79□□□□□ -1.8
NUP54-215ENST00000514313 EIF5A2Q9GZV4 153 aaKnown RBP3.79□□□□□ -1.8
NUP54-215ENST00000514313 MAP1LC3AQ9H492 121 aa3.79□□□□□ -1.8
NUP54-215ENST00000514313 DNAJC12Q9UKB3 198 aa3.79□□□□□ -1.8
NUP54-215ENST00000514313 MRPS16Q9Y3D3 137 aaKnown RBP3.79□□□□□ -1.8
NUP54-215ENST00000514313 CRB1P82279 1406 aa3.78□□□□□ -1.8
NUP54-215ENST00000514313 IGKV2-24A0A0C4DH68 120 aa3.78□□□□□ -1.8
NUP54-215ENST00000514313 E2F6O75461 281 aa3.78□□□□□ -1.8
NUP54-215ENST00000514313 APOEP02649 317 aa3.78□□□□□ -1.8
NUP54-215ENST00000514313 OPN1SWP03999 348 aa3.78□□□□□ -1.8
NUP54-215ENST00000514313 CRYBA1P05813 215 aa3.78□□□□□ -1.8
NUP54-215ENST00000514313 CDK2P24941 298 aa3.78□□□□□ -1.8
NUP54-215ENST00000514313 CRABP1P29762 137 aa3.78□□□□□ -1.8
NUP54-215ENST00000514313 PPP1R1AQ13522 171 aa3.78□□□□□ -1.8
NUP54-215ENST00000514313 PYCR3Q53H96 274 aa3.78□□□□□ -1.8
NUP54-215ENST00000514313 SCXQ7RTU7 201 aa3.78□□□□□ -1.8
NUP54-215ENST00000514313 SPZ1Q9BXG8 430 aa3.78□□□□□ -1.8
NUP54-215ENST00000514313 OR51B6Q9H340 312 aa3.78□□□□□ -1.8
NUP54-215ENST00000514313 HDGFL3Q9Y3E1 203 aa3.78□□□□□ -1.8
NUP54-215ENST00000514313 MYO5BQ9ULV0 1848 aa3.78□□□□□ -1.8
NUP54-215ENST00000514313 A0A1W2PP64 1363 aa3.77□□□□□ -1.81
NUP54-215ENST00000514313 SHROOM3Q8TF72 1996 aa3.77□□□□□ -1.81
NUP54-215ENST00000514313 TEX50A0A1B0GTY4 177 aa3.77□□□□□ -1.81
NUP54-215ENST00000514313 CXCR6O00574 342 aa3.77□□□□□ -1.81
NUP54-215ENST00000514313 STK16O75716 305 aa3.77□□□□□ -1.81
NUP54-215ENST00000514313 HLA-DRAP01903 254 aa3.77□□□□□ -1.81
NUP54-215ENST00000514313 MYL6P60660 151 aa3.77□□□□□ -1.81
NUP54-215ENST00000514313 HERVK_113P63121 156 aa3.77□□□□□ -1.81
NUP54-215ENST00000514313 ZNF664Q8N3J9 261 aa3.77□□□□□ -1.81
NUP54-215ENST00000514313 CD200R1Q8TD46 325 aa3.77□□□□□ -1.81
NUP54-215ENST00000514313 HAVCR2Q8TDQ0 301 aa3.77□□□□□ -1.81
NUP54-215ENST00000514313 CARHSP1Q9Y2V2 147 aaKnown RBP3.77□□□□□ -1.81
NUP54-215ENST00000514313 MRASO14807 208 aa3.76□□□□□ -1.81
NUP54-215ENST00000514313 DEDDO75618 318 aa3.76□□□□□ -1.81
NUP54-215ENST00000514313 IGLV6-57P01721 117 aa3.76□□□□□ -1.81
NUP54-215ENST00000514313 IL6P05231 212 aa3.76□□□□□ -1.81
NUP54-215ENST00000514313 ZNF22P17026 224 aaPredicted RBP3.76□□□□□ -1.81
NUP54-215ENST00000514313 COQ5Q5HYK3 327 aa3.76□□□□□ -1.81
NUP54-215ENST00000514313 CALHM3Q86XJ0 350 aa3.76□□□□□ -1.81
NUP54-215ENST00000514313 MUC7Q8TAX7 377 aa3.76□□□□□ -1.81
NUP54-215ENST00000514313 PIGXQ8TBF5 258 aa3.76□□□□□ -1.81
NUP54-215ENST00000514313 RNF133Q8WVZ7 376 aa3.76□□□□□ -1.81
NUP54-215ENST00000514313 PARD6GQ9BYG4 376 aaPredicted RBP3.76□□□□□ -1.81
NUP54-215ENST00000514313 FIS1Q9Y3D6 152 aa3.76□□□□□ -1.81
NUP54-215ENST00000514313 LRRN3E7EW58 273 aa3.75□□□□□ -1.81
NUP54-215ENST00000514313 SYNGR2O43760 224 aa3.75□□□□□ -1.81
NUP54-215ENST00000514313 IGLV3-27P01718 113 aa3.75□□□□□ -1.81
NUP54-215ENST00000514313 COL8A2P25067 703 aa3.75□□□□□ -1.81
NUP54-215ENST00000514313 KRTAP10-10P60014 251 aa3.75□□□□□ -1.81
NUP54-215ENST00000514313 CXCR4P61073 352 aa3.75□□□□□ -1.81
NUP54-215ENST00000514313 ITGB3BPQ13352 177 aaPredicted RBP3.75□□□□□ -1.81
NUP54-215ENST00000514313 CCDC122Q5T0U0 273 aa3.75□□□□□ -1.81
NUP54-215ENST00000514313 NOXRED1Q6NXP6 359 aa3.75□□□□□ -1.81
NUP54-215ENST00000514313 NAA40Q86UY6 237 aa3.75□□□□□ -1.81
NUP54-215ENST00000514313 OR2V1Q8NHB1 315 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms