RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 GZMHP20718 246 aa8.26□□□□□ -1.09
VCAN-210ENST00000513960 OTX2P32243 289 aa8.26□□□□□ -1.09
VCAN-210ENST00000513960 GNG10P50151 68 aa8.26□□□□□ -1.09
VCAN-210ENST00000513960 EIF3IQ13347 325 aaKnown RBP8.26□□□□□ -1.09
VCAN-210ENST00000513960 YRDCQ86U90 279 aaKnown RBP8.26□□□□□ -1.09
VCAN-210ENST00000513960 DTX1Q86Y01 620 aa8.26□□□□□ -1.09
VCAN-210ENST00000513960 C11orf42Q8N5U0 333 aa8.26□□□□□ -1.09
VCAN-210ENST00000513960 CMTM2Q8TAZ6 248 aa8.26□□□□□ -1.09
VCAN-210ENST00000513960 ZNF837Q96EG3 531 aaPredicted RBP8.26□□□□□ -1.09
VCAN-210ENST00000513960 ERRFI1Q9UJM3 462 aaPredicted RBP8.26□□□□□ -1.09
VCAN-210ENST00000513960 CACNA1DQ01668 2161 aa8.26□□□□□ -1.09
VCAN-210ENST00000513960 NCOA6Q14686 2063 aaPredicted RBP8.26□□□□□ -1.09
VCAN-210ENST00000513960 TRBV24-1A0A075B6N3 115 aa8.26□□□□□ -1.09
VCAN-210ENST00000513960 IGKV1D-13A0A0B4J2D9 117 aa8.26□□□□□ -1.09
VCAN-210ENST00000513960 A0A1B0GWJ7 208 aa8.26□□□□□ -1.09
VCAN-210ENST00000513960 HPRT1P00492 218 aa8.26□□□□□ -1.09
VCAN-210ENST00000513960 IGKV1-13P0DP09 117 aa8.26□□□□□ -1.09
VCAN-210ENST00000513960 PPP1CBP62140 327 aa8.26□□□□□ -1.09
VCAN-210ENST00000513960 MEF2BQ02080 365 aaPredicted RBP8.26□□□□□ -1.09
VCAN-210ENST00000513960 TRIM61Q5EBN2 209 aa8.26□□□□□ -1.09
VCAN-210ENST00000513960 SPSB1Q96BD6 273 aa8.26□□□□□ -1.09
VCAN-210ENST00000513960 CHD3Q12873 2000 aaKnown RBP8.26□□□□□ -1.09
VCAN-210ENST00000513960 MARCH11A6NNE9 402 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 DLEU1O43261 78 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 GALR2O43603 387 aaPredicted RBP8.25□□□□□ -1.09
VCAN-210ENST00000513960 IRF2P14316 349 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 OR10J1P30954 320 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 CCKARP32238 428 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 TDGF1P3P51864 188 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 LHFPL2Q6ZUX7 228 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 TCF23Q7RTU1 214 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 OR2V1Q8NHB1 315 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 GPR146Q96CH1 333 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 EML6Q6ZMW3 1958 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 IGKV1-27A0A075B6S5 117 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 CLEC18AA5D8T8 446 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 HOXA6P31267 233 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 TNFSF10P50591 281 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 UCP3P55916 312 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 RPL23P62829 140 aaKnown RBP8.25□□□□□ -1.09
VCAN-210ENST00000513960 FAM27BQ5VT28 67 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 SSX7Q7RTT5 188 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 CLEC18CQ8NCF0 446 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 NABP1Q96AH0 204 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 C10orf35Q96D05 121 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 ACTR3CQ9C0K3 210 aaPredicted RBP8.25□□□□□ -1.09
VCAN-210ENST00000513960 PPIAL4AQ9Y536 164 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 ZNF407Q9C0G0 2248 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 KNTC1P50748 2209 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 MDFIC2A0A1B0GVS7 189 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 PGPEP1LA6NFU8 196 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 RPL36A-HNRNPH2H7BZ11 118 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 SYNGR2O43760 224 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 CCL2P13500 99 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 RAC3P60763 192 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 SLC38A11Q08AI6 406 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 BEND2Q8NDZ0 799 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 OR4C12Q96R67 309 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 IMMP2LQ96T52 175 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 SF3B5Q9BWJ5 86 aaKnown RBP8.25□□□□□ -1.09
VCAN-210ENST00000513960 PROK2Q9HC23 129 aa8.25□□□□□ -1.09
VCAN-210ENST00000513960 IGKV1-12A0A0C4DH73 117 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 IGKV1D-12P01611 117 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 IGHEP01854 428 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 ZNF32P17041 273 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 AAED1Q7RTV5 226 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 HSPB9Q9BQS6 159 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 R4GN57 208 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 NTN3O00634 580 aaPredicted RBP8.24□□□□□ -1.09
VCAN-210ENST00000513960 SRD5A2P31213 254 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 GPM6AP51674 278 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 ZFP36L1Q07352 338 aaKnown RBP8.24□□□□□ -1.09
VCAN-210ENST00000513960 FFAR4Q5NUL3 377 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 ZNF468Q5VIY5 522 aaPredicted RBP8.24□□□□□ -1.09
VCAN-210ENST00000513960 ZDHHC23Q8IYP9 409 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 OR8G5Q8NG78 346 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 OR10J5Q8NHC4 309 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 PSMF1Q92530 271 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 SRXN1Q9BYN0 137 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 IL36RNQ9UBH0 155 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 RNF150Q9ULK6 438 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 POLR3KQ9Y2Y1 108 aaPredicted RBP8.24□□□□□ -1.09
VCAN-210ENST00000513960 DNPH1O43598 174 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 THBS3P49746 956 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 RPP30P78346 268 aaKnown RBP8.24□□□□□ -1.09
VCAN-210ENST00000513960 RAB35Q15286 201 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 FOXL2NBQ6ZUU3 175 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.24□□□□□ -1.09
VCAN-210ENST00000513960 ZIC4Q8N9L1 334 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 OR10G4Q8NGN3 311 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 OR10G9Q8NGN4 311 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 OR10G7Q8NGN6 311 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 SSC4DQ8WTU2 575 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 KCNE4Q8WWG9 221 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 ACY3Q96HD9 319 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 DIRC2Q96SL1 478 aa8.24□□□□□ -1.09
VCAN-210ENST00000513960 A0A0G2JRQ6 117 aa8.23□□□□□ -1.09
VCAN-210ENST00000513960 C1QTNF9BB2RNN3 333 aa8.23□□□□□ -1.09
VCAN-210ENST00000513960 TRAPPC2LH3BP13 241 aa8.23□□□□□ -1.09
VCAN-210ENST00000513960 CXCL13O43927 109 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms