RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 CFHR1Q03591 330 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 LRRC29Q8WV35 223 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 C18orf12Q96KH6 178 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 P2RX4Q99571 388 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 ARRDC1-AS1Q9H2J1 176 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 BARX1Q9HBU1 254 aaPredicted RBP7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 RPRMQ9NS64 109 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 DLL3Q9NYJ7 618 aa7.23□□□□□ -1.25
LIMCH1-216ENST00000512820 IGLV3-12A0A075B6K2 115 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 LOC102723971A0A1B0GUV8 181 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 FAM3BP58499 235 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 UBE2G1P62253 170 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 ZNF766Q5HY98 468 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 WDR25Q64LD2 544 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 MDP1Q86V88 176 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 OR8G5Q8NG78 346 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 OR10G8Q8NGN5 311 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 COMMD5Q9GZQ3 224 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 NAT8BQ9UHF3 227 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 SDK2Q58EX2 2172 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 C20orf202A1L168 122 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 NKX6-3A6NJ46 265 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 SHISA7A6NL88 538 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 LTBRP36941 435 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 RANP62826 216 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 SAXO1Q8IYX7 474 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 FGFRL1Q8N441 504 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 CMTM2Q8TAZ6 248 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 LRFN3Q9BTN0 628 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 FKBP11Q9NYL4 201 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 OR1A1Q9P1Q5 309 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 MED12Q93074 2177 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 KIAA1324LA8MWY0 1029 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 M0R1B8 84 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 GALR2O43603 387 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 HOXB1P14653 301 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 PMCHP20382 165 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 RHOBP62745 196 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 AESQ08117 197 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 SAP25Q8TEE9 199 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 PCGF1Q9BSM1 259 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 OR2J1Q9GZK6 312 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 CXXC4Q9H2H0 198 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 PLSCR2Q9NRY7 297 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 HRASP01112 189 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 OR5G3P0C626 314 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 UCP1P25874 307 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 RBKSQ9H477 322 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 DYNLRB1Q9NP97 96 aa7.22□□□□□ -1.25
LIMCH1-216ENST00000512820 IGLV3-32A0A0A0MS00 114 aa7.21□□□□□ -1.25
LIMCH1-216ENST00000512820 C5orf63A6NC05 138 aa7.21□□□□□ -1.25
LIMCH1-216ENST00000512820 UBE2CO00762 179 aa7.21□□□□□ -1.25
LIMCH1-216ENST00000512820 PDE6DO43924 150 aa7.21□□□□□ -1.25
LIMCH1-216ENST00000512820 WISP1O95388 367 aa7.21□□□□□ -1.25
LIMCH1-216ENST00000512820 OR2H2O95918 312 aa7.21□□□□□ -1.25
LIMCH1-216ENST00000512820 FOLR2P14207 255 aa7.21□□□□□ -1.25
LIMCH1-216ENST00000512820 SUB1P53999 127 aaKnown RBP eCLIP7.21□□□□□ -1.25
LIMCH1-216ENST00000512820 ERHP84090 104 aaKnown RBP7.21□□□□□ -1.25
LIMCH1-216ENST00000512820 TRAT1Q6PIZ9 186 aa7.21□□□□□ -1.25
LIMCH1-216ENST00000512820 SCCPDHQ8NBX0 429 aa7.21□□□□□ -1.25
LIMCH1-216ENST00000512820 CPEB3Q8NE35 698 aaKnown RBP7.21□□□□□ -1.25
LIMCH1-216ENST00000512820 SLC25A40Q8TBP6 338 aa7.21□□□□□ -1.25
LIMCH1-216ENST00000512820 SSMEM1Q8WWF3 244 aa7.21□□□□□ -1.25
LIMCH1-216ENST00000512820 POM121L2Q96KW2 1035 aa7.21□□□□□ -1.25
LIMCH1-216ENST00000512820 COA4Q9NYJ1 87 aa7.21□□□□□ -1.25
LIMCH1-216ENST00000512820 SH3BGRL2Q9UJC5 107 aa7.21□□□□□ -1.25
LIMCH1-216ENST00000512820 PLXNB3Q9ULL4 1909 aa7.21□□□□□ -1.25
LIMCH1-216ENST00000512820 C5orf52A6NGY3 159 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 M0R143 59 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 SPRY3O43610 288 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 CRISP2P16562 243 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 HOXA5P20719 270 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 FBXW9Q5XUX1 488 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 ZNF385CQ66K41 422 aaPredicted RBP7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 SLC23A3Q6PIS1 610 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 TREM2Q9NZC2 230 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 IL36GQ9NZH8 169 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 TRGV10A0A0A0MS01 117 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 TCAPO15273 167 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 DDTP30046 118 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 GNG4P50150 75 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 CCL20P78556 96 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 PRR27Q6MZM9 219 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 LYG1Q8N1E2 194 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 OR1P1Q8NH06 330 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 OR5B3Q8NH48 314 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 MAFAQ8NHW3 353 aaPredicted RBP7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 ACY3Q96HD9 319 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 RP1L1Q8IWN7 2480 aaPredicted RBP7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 LRRC30A6NM36 301 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 K7N7A8 449 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 OR10J4P0C629 311 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 OR52L2PQ8NGH6 319 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 Q8WTZ3 238 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 MSL2Q9HCI7 577 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 SH2D2AQ9NP31 389 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 CLCF1Q9UBD9 225 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 SLC45A2Q9UMX9 530 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 ABCA7Q8IZY2 2146 aa7.21□□□□□ -1.26
LIMCH1-216ENST00000512820 RFPL3SP0C7P2 107 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms