RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 LPLP06858 475 aa9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 ZBTB25P24278 435 aa9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 CEACAM6P40199 344 aa9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 KRTAP21-3Q3LHN1 58 aa9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 CT45A1Q5HYN5 189 aa9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 MOB3BQ86TA1 216 aa9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 OR4A4PQ8NGN8 299 aa9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 CT45A3Q8NHU0 189 aa9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 CAPSLQ8WWF8 208 aa9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 TAF15Q92804 592 aaKnown RBP eCLIP9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 MDFIQ99750 246 aa9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 OCSTAMPQ9BR26 566 aa9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 GINS4Q9BRT9 223 aa9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 AUNIPQ9H7T9 357 aa9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 OR1A1Q9P1Q5 309 aa9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 CEPT1Q9Y6K0 416 aa9.22□□□□□ -0.93
LIMCH1-210ENST00000509454 MEIS3P1A6NDR6 274 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 OOSP1A8MZH6 123 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 ST8SIA5O15466 376 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 XRCC3O43542 346 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 YPEL1O60688 119 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 APOA1P02647 267 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 FCER2P06734 321 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 GSTT2P0CG29 244 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 GSTT2BP0CG30 244 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 PTHLHP12272 177 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 DTYMKP23919 212 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 CD24P25063 80 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 ZNF134P52741 427 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 TAS2R20P59543 309 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 DIAPH2-AS1Q14236 149 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 HES1Q14469 280 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 AANATQ16613 207 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 Q3ZCU0 254 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 SLC25A48Q6ZT89 311 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 TMEM219Q86XT9 240 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 LINC00311Q8N616 119 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 OR10J5Q8NHC4 309 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 YPEL2Q96QA6 119 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 IFT46Q9NQC8 304 aa9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 RBM7Q9Y580 266 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-210ENST00000509454 VGLL3A8MV65 326 aa9.21□□□□□ -0.94
LIMCH1-210ENST00000509454 LY6LH3BQJ8 138 aa9.21□□□□□ -0.94
LIMCH1-210ENST00000509454 TIMM23O14925 209 aa9.21□□□□□ -0.94
LIMCH1-210ENST00000509454 GAPDHP04406 335 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-210ENST00000509454 ELK1P19419 428 aa9.21□□□□□ -0.94
LIMCH1-210ENST00000509454 RAB7AP51149 207 aa9.21□□□□□ -0.94
LIMCH1-210ENST00000509454 ARPC4P59998 168 aa9.21□□□□□ -0.94
LIMCH1-210ENST00000509454 IGSF11Q5DX21 431 aa9.21□□□□□ -0.94
LIMCH1-210ENST00000509454 SNX29P2Q8IUI4 249 aa9.21□□□□□ -0.94
LIMCH1-210ENST00000509454 DRAM1Q8N682 238 aa9.21□□□□□ -0.94
LIMCH1-210ENST00000509454 C8orf31Q8N9H6 132 aa9.21□□□□□ -0.94
LIMCH1-210ENST00000509454 ZNF439Q8NDP4 499 aa9.21□□□□□ -0.94
LIMCH1-210ENST00000509454 OR56B4Q8NH76 319 aa9.21□□□□□ -0.94
LIMCH1-210ENST00000509454 EDARADDQ8WWZ3 215 aa9.21□□□□□ -0.94
LIMCH1-210ENST00000509454 C6orf62Q9GZU0 229 aaPredicted RBP9.21□□□□□ -0.94
LIMCH1-210ENST00000509454 RAB18Q9NP72 206 aa9.21□□□□□ -0.94
LIMCH1-210ENST00000509454 CCDC59Q9P031 241 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-210ENST00000509454 RSL24D1Q9UHA3 163 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-210ENST00000509454 ADAM30Q9UKF2 790 aa9.21□□□□□ -0.94
LIMCH1-210ENST00000509454 PITPNC1Q9UKF7 332 aa9.21□□□□□ -0.94
LIMCH1-210ENST00000509454 IGHV3-72A0A0B4J1Y9 119 aa9.2□□□□□ -0.94
LIMCH1-210ENST00000509454 SSX5O60225 188 aa9.2□□□□□ -0.94
LIMCH1-210ENST00000509454 FAM106CPP0CH98 169 aa9.2□□□□□ -0.94
LIMCH1-210ENST00000509454 RNASE12Q5GAN4 147 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-210ENST00000509454 TGIF2LXQ8IUE1 241 aa9.2□□□□□ -0.94
LIMCH1-210ENST00000509454 OR8H3Q8N146 312 aa9.2□□□□□ -0.94
LIMCH1-210ENST00000509454 DYNC2LI1Q8TCX1 351 aa9.2□□□□□ -0.94
LIMCH1-210ENST00000509454 CMTM3Q96MX0 182 aa9.2□□□□□ -0.94
LIMCH1-210ENST00000509454 DCUN1D5Q9BTE7 237 aa9.2□□□□□ -0.94
LIMCH1-210ENST00000509454 PARP12Q9H0J9 701 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-210ENST00000509454 RDH8Q9NYR8 311 aa9.2□□□□□ -0.94
LIMCH1-210ENST00000509454 EXTL2Q9UBQ6 330 aa9.2□□□□□ -0.94
LIMCH1-210ENST00000509454 RNF150Q9ULK6 438 aa9.2□□□□□ -0.94
LIMCH1-210ENST00000509454 TCF19Q9Y242 345 aa9.2□□□□□ -0.94
LIMCH1-210ENST00000509454 IGKV1D-8A0A087WSZ0 117 aa9.19□□□□□ -0.94
LIMCH1-210ENST00000509454 IGHV1-3A0A0C4DH29 117 aa9.19□□□□□ -0.94
LIMCH1-210ENST00000509454 IGKV1-6A0A0C4DH72 117 aa9.19□□□□□ -0.94
LIMCH1-210ENST00000509454 J3QRK9 145 aa9.19□□□□□ -0.94
LIMCH1-210ENST00000509454 SNRNP70P08621 437 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-210ENST00000509454 PRSS3P35030 304 aa9.19□□□□□ -0.94
LIMCH1-210ENST00000509454 CBX5P45973 191 aa9.19□□□□□ -0.94
LIMCH1-210ENST00000509454 OR3A3P47888 321 aa9.19□□□□□ -0.94
LIMCH1-210ENST00000509454 DYNLT3P51808 116 aa9.19□□□□□ -0.94
LIMCH1-210ENST00000509454 RAG2P55895 527 aa9.19□□□□□ -0.94
LIMCH1-210ENST00000509454 HNF4GQ14541 408 aa9.19□□□□□ -0.94
LIMCH1-210ENST00000509454 HERPUD1Q15011 391 aa9.19□□□□□ -0.94
LIMCH1-210ENST00000509454 ARSJQ5FYB0 599 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-210ENST00000509454 C12orf54Q6X4T0 127 aa9.19□□□□□ -0.94
LIMCH1-210ENST00000509454 LIAT1Q6ZQX7 453 aa9.19□□□□□ -0.94
LIMCH1-210ENST00000509454 GVQW1Q8N7I0 195 aa9.19□□□□□ -0.94
LIMCH1-210ENST00000509454 BEST4Q8NFU0 473 aa9.19□□□□□ -0.94
LIMCH1-210ENST00000509454 PIFOQ8TCI5 191 aa9.19□□□□□ -0.94
LIMCH1-210ENST00000509454 RTN4IP1Q8WWV3 396 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-210ENST00000509454 C11orf54Q9H0W9 315 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-210ENST00000509454 ZNF221Q9UK13 617 aa9.19□□□□□ -0.94
LIMCH1-210ENST00000509454 CUBNO60494 3623 aa9.18□□□□□ -0.94
LIMCH1-210ENST00000509454 SAA2-SAA4A0A096LPE2 208 aa9.18□□□□□ -0.94
LIMCH1-210ENST00000509454 A0A1W2PPI3 338 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms