RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 FTH1P19P0C7X4 201 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 CHRNB4P30926 498 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 RND3P61587 244 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 SLC35E3Q7Z769 313 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 OR52L2PQ8NGH6 319 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 HES4Q9HCC6 221 aa9.24□□□□□ -0.93
LIMCH1-205ENST00000503057 FAM74A7A6NL05 159 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 NTN3O00634 580 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 CDK2AP1O14519 115 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 MGST3O14880 152 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 HSPB1P04792 205 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 BCL2P10415 239 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 OPRK1P41145 380 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 NPBWR1P48145 328 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 PLAURQ03405 335 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 SMUG1Q53HV7 270 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 CCL17Q92583 94 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 ZNF837Q96EG3 531 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 TIMP4Q99727 224 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 KLHDC3Q9BQ90 382 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 PRDM6Q9NQX0 595 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 ZNHIT1O43257 154 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 HOXD4P09016 255 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 KLK2P20151 261 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 PTGDSP41222 190 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 CSN1S1P47710 185 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 RUNX1Q01196 453 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 ASCL5Q7RTU5 278 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 MOB3BQ86TA1 216 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 TP53RKQ96S44 253 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 SEC14L6B5MCN3 397 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 IGHV3-13P01766 116 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 IGHV3-7P01780 117 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 FABP4P15090 132 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 EIF4E3Q8N5X7 224 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 TMEM167BQ9NRX6 74 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 CLN8Q9UBY8 286 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 IL17BQ9UHF5 180 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 LNP1A1A4G5 178 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 TMPRSS2O15393 492 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 GDF9O60383 454 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 CFPP27918 469 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 LDLRAD3Q86YD5 345 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 OR1L4Q8NGR5 311 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 GINS3Q9BRX5 216 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 TLNRD1Q9H1K6 362 aa9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 OPN3Q9H1Y3 402 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 ZNF552Q9H707 407 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-205ENST00000503057 NKX2-8O15522 239 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 KLF7O75840 302 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 SMIM6P0DI80 62 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 GNG4P50150 75 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 PRRX1P54821 245 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 SIGLECL1Q8N7X8 197 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 REPIN1Q9BWE0 567 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 AMMECR1Q9Y4X0 333 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 CLDN16Q9Y5I7 305 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 IGHV3OR15-7A0A075B7D8 119 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 A0A0A6YYD4 124 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 A0A1W2PN81 502 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 CHRNA7P36544 502 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 FAM162BQ5T6X4 162 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 STPG1Q5TH74 334 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 ZNF705AQ6ZN79 300 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 SMIM15Q7Z3B0 74 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 TIPARPQ7Z3E1 657 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 OR5B3Q8NH48 314 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 KLF14Q8TD94 323 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 MESP1Q9BRJ9 268 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 ZNF319Q9P2F9 582 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 SIGLEC5O15389 551 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 CELA3AP09093 270 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 NSUN5P2Q63ZY6 315 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 GCSAMQ8N6F7 178 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 TXN2Q99757 166 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 FOXD3Q9UJU5 478 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 CTRB1P17538 263 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 TPPP2P59282 170 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 RSPO4Q2I0M5 234 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 CTRB2Q6GPI1 263 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 OR10D4PQ8NGN7 298 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 ZNF251Q9BRH9 671 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 RBKSQ9H477 322 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 ZNF586Q9NXT0 402 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 OR1A1Q9P1Q5 309 aa9.22□□□□□ -0.93
LIMCH1-205ENST00000503057 PQLC2LA1A4F0 135 aa9.21□□□□□ -0.93
LIMCH1-205ENST00000503057 MSGN1A6NI15 193 aa9.21□□□□□ -0.93
LIMCH1-205ENST00000503057 CT45A10P0DMU9 189 aa9.21□□□□□ -0.93
LIMCH1-205ENST00000503057 SNX22Q96L94 193 aa9.21□□□□□ -0.93
LIMCH1-205ENST00000503057 TECRQ9NZ01 308 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-205ENST00000503057 XKRY2A2RUG3 117 aa9.21□□□□□ -0.93
LIMCH1-205ENST00000503057 RAB29O14966 203 aa9.21□□□□□ -0.93
LIMCH1-205ENST00000503057 C1QL1O75973 258 aa9.21□□□□□ -0.93
LIMCH1-205ENST00000503057 DIRC2Q96SL1 478 aa9.21□□□□□ -0.93
LIMCH1-205ENST00000503057 ABHD14AQ9BUJ0 271 aa9.21□□□□□ -0.93
LIMCH1-205ENST00000503057 SH3BGRL3Q9H299 93 aa9.21□□□□□ -0.93
LIMCH1-205ENST00000503057 SAP30LQ9HAJ7 183 aa9.21□□□□□ -0.93
LIMCH1-205ENST00000503057 CARHSP1Q9Y2V2 147 aaKnown RBP9.21□□□□□ -0.93
LIMCH1-205ENST00000503057 CABIN1Q9Y6J0 2220 aa9.21□□□□□ -0.93
LIMCH1-205ENST00000503057 LTBP2Q14767 1821 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms