RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 Q6ZPA2 131 aa7.01□□□□□ -1.29
SF3A1-210ENST00000498259 ZNF818PQ6ZRF7 136 aa7.01□□□□□ -1.29
SF3A1-210ENST00000498259 LDLRAD3Q86YD5 345 aa7.01□□□□□ -1.29
SF3A1-210ENST00000498259 TPRX1Q8N7U7 411 aa7.01□□□□□ -1.29
SF3A1-210ENST00000498259 RNASE11Q8TAA1 199 aaKnown RBP7.01□□□□□ -1.29
SF3A1-210ENST00000498259 TMEM230Q96A57 120 aa7.01□□□□□ -1.29
SF3A1-210ENST00000498259 RRNAD1Q96FB5 475 aaKnown RBP7.01□□□□□ -1.29
SF3A1-210ENST00000498259 C2orf50Q96LR7 162 aa7.01□□□□□ -1.29
SF3A1-210ENST00000498259 TMEM56Q96MV1 263 aa7.01□□□□□ -1.29
SF3A1-210ENST00000498259 FYTTD1Q96QD9 318 aaKnown RBP7.01□□□□□ -1.29
SF3A1-210ENST00000498259 S1PR3Q99500 378 aa7.01□□□□□ -1.29
SF3A1-210ENST00000498259 CHIAQ9BZP6 476 aa7.01□□□□□ -1.29
SF3A1-210ENST00000498259 TMEM222Q9H0R3 208 aa7.01□□□□□ -1.29
SF3A1-210ENST00000498259 OR2D2Q9H210 308 aa7.01□□□□□ -1.29
SF3A1-210ENST00000498259 LIME1Q9H400 295 aa7.01□□□□□ -1.29
SF3A1-210ENST00000498259 CCL28Q9NRJ3 127 aa7.01□□□□□ -1.29
SF3A1-210ENST00000498259 GFOD1Q9NXC2 390 aa7.01□□□□□ -1.29
SF3A1-210ENST00000498259 OR1A1Q9P1Q5 309 aa7.01□□□□□ -1.29
SF3A1-210ENST00000498259 TMEM56-RWDD3S4R434 201 aa7.01□□□□□ -1.29
SF3A1-210ENST00000498259 DYSFO75923 2080 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 HMSDA8MTL9 139 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 A8MV72 311 aaPredicted RBP7□□□□□ -1.29
SF3A1-210ENST00000498259 BOLA2-SMG1P6H3BVE0 249 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 J3QKU1 62 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 OVOL3O00110 214 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 CDS2O95674 445 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 CGB3P0DN86 165 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 CGB7P0DN87 165 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 VDAC1P21796 283 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 UCP1P25874 307 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 PSMB6P28072 239 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 PDLIM4P50479 330 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 ARHGDIBP52566 201 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 PRRX1P54821 245 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 SUPT4H1P63272 117 aaKnown RBP7□□□□□ -1.29
SF3A1-210ENST00000498259 TMEM187Q14656 261 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 SP5Q6BEB4 398 aaPredicted RBP7□□□□□ -1.29
SF3A1-210ENST00000498259 FAM219AQ8IW50 185 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 C8orf31Q8N9H6 132 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 INO80EQ8NBZ0 244 aaPredicted RBP7□□□□□ -1.29
SF3A1-210ENST00000498259 OR52L2PQ8NGH6 319 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 RFESDQ8TAC1 157 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 TNFRSF14Q92956 283 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 RBPMSQ93062 196 aaKnown RBP7□□□□□ -1.29
SF3A1-210ENST00000498259 ABHD14AQ9BUJ0 271 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 PLCE1Q9P212 2302 aa7□□□□□ -1.29
SF3A1-210ENST00000498259 ADGRG4Q8IZF6 3080 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 IGKV1D-13A0A0B4J2D9 117 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 TOR1AO14656 332 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 ST8SIA5O15466 376 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 CLDN1O95832 211 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 HOXB5P09067 269 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 IGKV1-13P0DP09 117 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 SLC25A6P12236 298 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 ZNF16P17020 682 aaPredicted RBP6.99□□□□□ -1.29
SF3A1-210ENST00000498259 PVALBP20472 110 aaPredicted RBP6.99□□□□□ -1.29
SF3A1-210ENST00000498259 NFYBP25208 207 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 SSTR2P30874 369 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 PPP1CCP36873 323 aaKnown RBP6.99□□□□□ -1.29
SF3A1-210ENST00000498259 H2BFSP57053 126 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 LOXL3P58215 753 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 C17orf58Q2M2W7 97 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 IAH1Q2TAA2 248 aaPredicted RBP6.99□□□□□ -1.29
SF3A1-210ENST00000498259 ANKRD55Q3KP44 614 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 TMEM268Q5VZI3 342 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 TMEM200BQ69YZ2 307 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 FAM71F2Q6NXP2 309 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 TMEM65Q6PI78 240 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 DRAM1Q8N682 238 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 GLYATL2Q8WU03 294 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 LSM10Q969L4 123 aaKnown RBP6.99□□□□□ -1.29
SF3A1-210ENST00000498259 MSI2Q96DH6 328 aaKnown RBP6.99□□□□□ -1.29
SF3A1-210ENST00000498259 ABHD14BQ96IU4 210 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 DCTN5Q9BTE1 182 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 SSBP3Q9BWW4 388 aaPredicted RBP6.99□□□□□ -1.29
SF3A1-210ENST00000498259 PATZ1Q9HBE1 687 aaKnown RBP6.99□□□□□ -1.29
SF3A1-210ENST00000498259 RPUSD1Q9UJJ7 312 aaKnown RBP6.99□□□□□ -1.29
SF3A1-210ENST00000498259 PSG11Q9UQ72 335 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 NBASA2RRP1 2371 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 IGSF10Q6WRI0 2623 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 USP24Q9UPU5 2620 aa6.99□□□□□ -1.29
SF3A1-210ENST00000498259 HIVEP3Q5T1R4 2406 aa6.98□□□□□ -1.29
SF3A1-210ENST00000498259 LOC105371242A0A075B767 164 aa6.98□□□□□ -1.29
SF3A1-210ENST00000498259 PPIAL4CA0A0B4J2A2 164 aa6.98□□□□□ -1.29
SF3A1-210ENST00000498259 A0A0D9SG52 128 aa6.98□□□□□ -1.29
SF3A1-210ENST00000498259 A0A1B0GU03 582 aa6.98□□□□□ -1.29
SF3A1-210ENST00000498259 RBFOX2O43251 390 aaKnown RBP eCLIP6.98□□□□□ -1.29
SF3A1-210ENST00000498259 LY86O95711 162 aa6.98□□□□□ -1.29
SF3A1-210ENST00000498259 TFF1P04155 84 aa6.98□□□□□ -1.29
SF3A1-210ENST00000498259 PPIAL4GP0DN37 164 aa6.98□□□□□ -1.29
SF3A1-210ENST00000498259 RRASP10301 218 aa6.98□□□□□ -1.29
SF3A1-210ENST00000498259 SLC25A4P12235 298 aa6.98□□□□□ -1.29
SF3A1-210ENST00000498259 CDKN1AP38936 164 aa6.98□□□□□ -1.29
SF3A1-210ENST00000498259 THBS3P49746 956 aa6.98□□□□□ -1.29
SF3A1-210ENST00000498259 ERVFRD-1P60508 538 aa6.98□□□□□ -1.29
SF3A1-210ENST00000498259 GNMTQ14749 295 aa6.98□□□□□ -1.29
SF3A1-210ENST00000498259 LTC4SQ16873 150 aa6.98□□□□□ -1.29
SF3A1-210ENST00000498259 SP6Q3SY56 376 aa6.98□□□□□ -1.29
SF3A1-210ENST00000498259 C11orf87Q6NUJ2 197 aa6.98□□□□□ -1.29
SF3A1-210ENST00000498259 CLEC2AQ6UVW9 174 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms