RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 HOXC12P31275 282 aa10.49□□□□□ -0.73
HMGN1-220ENST00000492280 GABRA2P47869 451 aa10.49□□□□□ -0.73
HMGN1-220ENST00000492280 ARL16Q0P5N6 197 aa10.49□□□□□ -0.73
HMGN1-220ENST00000492280 EDDM3AQ14507 147 aa10.49□□□□□ -0.73
HMGN1-220ENST00000492280 MSMPQ1L6U9 139 aa10.49□□□□□ -0.73
HMGN1-220ENST00000492280 ZNF880Q6PDB4 577 aa10.49□□□□□ -0.73
HMGN1-220ENST00000492280 VHLLQ6RSH7 139 aa10.49□□□□□ -0.73
HMGN1-220ENST00000492280 Q6ZT83 130 aa10.49□□□□□ -0.73
HMGN1-220ENST00000492280 LRP11Q86VZ4 500 aa10.49□□□□□ -0.73
HMGN1-220ENST00000492280 DRAM1Q8N682 238 aa10.49□□□□□ -0.73
HMGN1-220ENST00000492280 WDR31Q8NA23 367 aa10.49□□□□□ -0.73
HMGN1-220ENST00000492280 OR5D13Q8NGL4 314 aa10.49□□□□□ -0.73
HMGN1-220ENST00000492280 VSIRQ9H7M9 311 aa10.49□□□□□ -0.73
HMGN1-220ENST00000492280 PLEKHF2Q9H8W4 249 aa10.49□□□□□ -0.73
HMGN1-220ENST00000492280 YLPM1P49750 1951 aaKnown RBP10.48□□□□□ -0.73
HMGN1-220ENST00000492280 UMAD1C9J7I0 102 aa10.48□□□□□ -0.73
HMGN1-220ENST00000492280 PITX3O75364 302 aa10.48□□□□□ -0.73
HMGN1-220ENST00000492280 ZNF585BQ52M93 769 aa10.48□□□□□ -0.73
HMGN1-220ENST00000492280 LYPD6BQ8NI32 183 aa10.48□□□□□ -0.73
HMGN1-220ENST00000492280 CABLES2Q9BTV7 478 aa10.48□□□□□ -0.73
HMGN1-220ENST00000492280 OR2D2Q9H210 308 aa10.48□□□□□ -0.73
HMGN1-220ENST00000492280 DSCAMO60469 2012 aa10.48□□□□□ -0.73
HMGN1-220ENST00000492280 CSMD1Q96PZ7 3565 aa10.48□□□□□ -0.73
HMGN1-220ENST00000492280 A0A1W2PPE2 198 aa10.48□□□□□ -0.73
HMGN1-220ENST00000492280 C12orf77C9JDV5 145 aa10.48□□□□□ -0.73
HMGN1-220ENST00000492280 K7EM74 188 aa10.48□□□□□ -0.73
HMGN1-220ENST00000492280 RPL30P62888 115 aaKnown RBP10.48□□□□□ -0.73
HMGN1-220ENST00000492280 MRPL49Q13405 166 aaKnown RBP10.48□□□□□ -0.73
HMGN1-220ENST00000492280 SLC25A24Q6NUK1 477 aa10.48□□□□□ -0.73
HMGN1-220ENST00000492280 THNSL2Q86YJ6 484 aa10.48□□□□□ -0.73
HMGN1-220ENST00000492280 C11orf53Q8IXP5 236 aa10.48□□□□□ -0.73
HMGN1-220ENST00000492280 ZFP57Q9NU63 452 aa10.48□□□□□ -0.73
HMGN1-220ENST00000492280 DUSP13Q9UII6 198 aa10.48□□□□□ -0.73
HMGN1-220ENST00000492280 ATRXP46100 2492 aa10.48□□□□□ -0.73
HMGN1-220ENST00000492280 SVEP1Q4LDE5 3571 aa10.47□□□□□ -0.73
HMGN1-220ENST00000492280 NUDT19A8MXV4 375 aa10.47□□□□□ -0.73
HMGN1-220ENST00000492280 CTXN2P0C2S0 81 aa10.47□□□□□ -0.73
HMGN1-220ENST00000492280 GLIPR1P48060 266 aa10.47□□□□□ -0.73
HMGN1-220ENST00000492280 ABHD14BQ96IU4 210 aa10.47□□□□□ -0.73
HMGN1-220ENST00000492280 TREM2Q9NZC2 230 aa10.47□□□□□ -0.73
HMGN1-220ENST00000492280 POLDIP2Q9Y2S7 368 aa10.47□□□□□ -0.73
HMGN1-220ENST00000492280 PUS1Q9Y606 427 aaKnown RBP eCLIP10.47□□□□□ -0.73
HMGN1-220ENST00000492280 IGHV3OR15-7A0A075B7D8 119 aa10.47□□□□□ -0.73
HMGN1-220ENST00000492280 A0A1W2PPH5 198 aa10.47□□□□□ -0.73
HMGN1-220ENST00000492280 KRASP01116 189 aa10.47□□□□□ -0.73
HMGN1-220ENST00000492280 FGF8P55075 233 aaPredicted RBP10.47□□□□□ -0.73
HMGN1-220ENST00000492280 PEA15Q15121 130 aa10.47□□□□□ -0.73
HMGN1-220ENST00000492280 KRBOX4Q5JUW0 171 aa10.47□□□□□ -0.73
HMGN1-220ENST00000492280 FAM201AQ5SY85 155 aa10.47□□□□□ -0.73
HMGN1-220ENST00000492280 SHEQ5VZ18 495 aa10.47□□□□□ -0.73
HMGN1-220ENST00000492280 SFT2D1Q8WV19 159 aa10.47□□□□□ -0.73
HMGN1-220ENST00000492280 COQ2Q96H96 371 aa10.47□□□□□ -0.73
HMGN1-220ENST00000492280 FAM234AQ9H0X4 552 aa10.47□□□□□ -0.73
HMGN1-220ENST00000492280 TNCP24821 2201 aa10.46□□□□□ -0.73
HMGN1-220ENST00000492280 DCHS2Q6V1P9 2916 aa10.46□□□□□ -0.73
HMGN1-220ENST00000492280 hCG_1809904A0A1W2PP81 198 aa10.46□□□□□ -0.73
HMGN1-220ENST00000492280 A0A1W2PR64 198 aa10.46□□□□□ -0.73
HMGN1-220ENST00000492280 A0A1W2PRV1 198 aa10.46□□□□□ -0.73
HMGN1-220ENST00000492280 IQCF6A8MYZ5 107 aa10.46□□□□□ -0.73
HMGN1-220ENST00000492280 SH2D1BO14796 132 aa10.46□□□□□ -0.73
HMGN1-220ENST00000492280 IGHG3P01860 377 aa10.46□□□□□ -0.73
HMGN1-220ENST00000492280 RAC2P15153 192 aa10.46□□□□□ -0.73
HMGN1-220ENST00000492280 G6PCP35575 357 aa10.46□□□□□ -0.73
HMGN1-220ENST00000492280 ZNF266Q14584 549 aa10.46□□□□□ -0.73
HMGN1-220ENST00000492280 SPSB3Q6PJ21 355 aa10.46□□□□□ -0.73
HMGN1-220ENST00000492280 LINC00596Q86U02 117 aa10.46□□□□□ -0.73
HMGN1-220ENST00000492280 RIMS4Q9H426 269 aaPredicted RBP10.46□□□□□ -0.73
HMGN1-220ENST00000492280 C7orf77A4D0Y5 90 aa10.46□□□□□ -0.74
HMGN1-220ENST00000492280 DEFA4P12838 97 aa10.46□□□□□ -0.74
HMGN1-220ENST00000492280 CBR1P16152 277 aa10.46□□□□□ -0.74
HMGN1-220ENST00000492280 EGR1P18146 543 aa10.46□□□□□ -0.74
HMGN1-220ENST00000492280 ZNF83P51522 516 aa10.46□□□□□ -0.74
HMGN1-220ENST00000492280 ACSF3Q4G176 576 aaPredicted RBP10.46□□□□□ -0.74
HMGN1-220ENST00000492280 SPANXN5Q5MJ07 72 aa10.46□□□□□ -0.74
HMGN1-220ENST00000492280 UTF1Q5T230 341 aa10.46□□□□□ -0.74
HMGN1-220ENST00000492280 OR8G2PQ6IF36 304 aa10.46□□□□□ -0.74
HMGN1-220ENST00000492280 WDR82Q6UXN9 313 aa10.46□□□□□ -0.74
HMGN1-220ENST00000492280 SEM1Q6ZVN7 128 aa10.46□□□□□ -0.74
HMGN1-220ENST00000492280 SSX7Q7RTT5 188 aa10.46□□□□□ -0.74
HMGN1-220ENST00000492280 HAPLN4Q86UW8 402 aa10.46□□□□□ -0.74
HMGN1-220ENST00000492280 KCNJ16Q9NPI9 418 aa10.46□□□□□ -0.74
HMGN1-220ENST00000492280 DKK4Q9UBT3 224 aa10.46□□□□□ -0.74
HMGN1-220ENST00000492280 NDRG3Q9UGV2 375 aa10.46□□□□□ -0.74
HMGN1-220ENST00000492280 TRBV6-6A0A0A6YYG2 114 aa10.45□□□□□ -0.74
HMGN1-220ENST00000492280 OR5H1A6NKK0 313 aa10.45□□□□□ -0.74
HMGN1-220ENST00000492280 HMGB3O15347 200 aaKnown RBP10.45□□□□□ -0.74
HMGN1-220ENST00000492280 ST8SIA5O15466 376 aa10.45□□□□□ -0.74
HMGN1-220ENST00000492280 IGKV3-15P01624 115 aa10.45□□□□□ -0.74
HMGN1-220ENST00000492280 HBZP02008 142 aa10.45□□□□□ -0.74
HMGN1-220ENST00000492280 ZNF146Q15072 292 aa10.45□□□□□ -0.74
HMGN1-220ENST00000492280 SRSF7Q16629 238 aaKnown RBP eCLIP10.45□□□□□ -0.74
HMGN1-220ENST00000492280 OR13A1Q8NGR1 328 aa10.45□□□□□ -0.74
HMGN1-220ENST00000492280 SLC25A31Q9H0C2 315 aa10.45□□□□□ -0.74
HMGN1-220ENST00000492280 TRAV17A0A0B4J275 112 aa10.45□□□□□ -0.74
HMGN1-220ENST00000492280 IGHV1-18A0A0C4DH31 117 aa10.45□□□□□ -0.74
HMGN1-220ENST00000492280 COLCA2A8K830 154 aa10.45□□□□□ -0.74
HMGN1-220ENST00000492280 TNFSF13O75888 250 aa10.45□□□□□ -0.74
HMGN1-220ENST00000492280 SELLP14151 372 aa10.45□□□□□ -0.74
HMGN1-220ENST00000492280 IL2RGP31785 369 aa10.45□□□□□ -0.74
HMGN1-220ENST00000492280 ELLP55199 621 aaPredicted RBP10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms