RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 PEG3Q9GZU2 1588 aa2.78□□□□□ -1.96
HMGB1P38-201ENST00000490557 TRAV40A0A0B4J280 105 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 PQLC2LA1A4F0 135 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 MYBPHLA2RUH7 354 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 C5orf49A4QMS7 147 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 GMNCA6NCL1 334 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 OR4C46A6NHA9 309 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 CD300LBA8K4G0 201 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 ZNF705GA8MUZ8 300 aaPredicted RBP2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 EEF1E1-BLOC1S5C9J1V9 151 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 NDUFC2-KCTD14E9PQ53 114 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 RBFOX2O43251 390 aaKnown RBP eCLIP2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 EEF1E1O43324 174 aaKnown RBP2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 STK16O75716 305 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 S1PR2O95136 353 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 CYB5R3P00387 301 aaPredicted RBP2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 ATP5G1P05496 136 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 CRYBA1P05813 215 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 OR4Q2P0C623 313 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 IDO1P14902 403 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 MUC1P15941 1255 aaPredicted RBP2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 GADD45AP24522 165 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 CD34P28906 385 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 S100GP29377 79 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 CRABP1P29762 137 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 POLR2IP36954 125 aaKnown RBP2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 MARCKSL1P49006 195 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 SNAP25P60880 206 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 GRB2P62993 217 aaKnown RBP2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 CRADDP78560 199 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 PRDX4Q13162 271 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 PNOCQ13519 176 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 PMAIP1Q13794 54 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 IHHQ14623 411 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 IRF4Q15306 451 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 NXNL2Q5VZ03 156 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 SLC25A34Q6PIV7 304 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 SMARCD3Q6STE5 483 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 C1orf158Q8N1D5 194 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 SLC35F6Q8N357 371 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 SLC25A45Q8N413 288 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 STX19Q8N4C7 294 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 C15orf56Q8N910 161 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 ZNF709Q8N972 641 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 GHSRQ92847 366 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 SLC35G5Q96KT7 338 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 RNF157Q96PX1 679 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 OR4K3Q96R72 315 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 OR52B2Q96RD2 323 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 PRSS27Q9BQR3 290 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 ZNF717Q9BY31 904 aaPredicted RBP2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 MIXL1Q9H2W2 232 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 HES4Q9HCC6 221 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 PARP11Q9NR21 331 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 TMEM216Q9P0N5 145 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 ANGPT4Q9Y264 503 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 ZNF780BQ9Y6R6 833 aa2.77□□□□□ -1.97
HMGB1P38-201ENST00000490557 NUP155O75694 1391 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 KIF24Q5T7B8 1368 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 CAMSAP1Q5T5Y3 1602 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 IGKV1-27A0A075B6S5 117 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 A0A1B0GV50 99 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 DNASE2O00115 360 aaPredicted RBP2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 GPR31O00270 319 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 FFAR1O14842 300 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 COX7A2P2O60397 106 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 SERPINB7O75635 380 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 SERPINA7P05543 415 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 FAM228BP0C875 321 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 SCGB1C2P0DMR2 95 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 ESDP10768 282 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 SCGB1A1P11684 91 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 ELK4P28324 431 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 ESRRGP62508 458 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 MEF2CQ06413 473 aaPredicted RBP2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 FAM222AQ5U5X8 452 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 FAM78BQ5VT40 261 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 TEX36Q5VZQ5 186 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 ZNF880Q6PDB4 577 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 IGFL1Q6UW32 110 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 SHISA6Q6ZSJ9 500 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 HMGN2P46Q86SG4 172 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 DHFR2Q86XF0 187 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 LYPD1Q8N2G4 141 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 DRAM1Q8N682 238 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 OR9I1Q8NGQ6 314 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 OR1J4Q8NGS1 313 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 SCGB1C1Q8TD33 95 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 FXYD5Q96DB9 178 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 RMND5BQ96G75 393 aaPredicted RBP2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 EIF5A2Q9GZV4 153 aaKnown RBP2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 IDI2-AS1Q9NZ38 188 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 RBM12B-AS1Q9P1G2 102 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 POMPQ9Y244 141 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 HSPB11Q9Y547 144 aa2.76□□□□□ -1.97
HMGB1P38-201ENST00000490557 BRCA1P38398 1863 aaKnown RBP2.75□□□□□ -1.97
HMGB1P38-201ENST00000490557 DOCK9Q9BZ29 2069 aa2.75□□□□□ -1.97
HMGB1P38-201ENST00000490557 IGLV1-50A0A075B6I6 118 aa2.75□□□□□ -1.97
HMGB1P38-201ENST00000490557 IGHV2-26A0A0B4J1V2 119 aa2.75□□□□□ -1.97
HMGB1P38-201ENST00000490557 A0A0X1KG70 313 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms