RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 SLA2Q9H6Q3 261 aa11.77□□□□□ -0.53
CUX1-209ENST00000487284 METTL8Q9H825 291 aaKnown RBP11.77□□□□□ -0.53
CUX1-209ENST00000487284 COMMD9Q9P000 198 aa11.77□□□□□ -0.53
CUX1-209ENST00000487284 ITPR2Q14571 2701 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 PPIAL4EA0A075B759 164 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 C13orf42A0A1B0GVH6 325 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 A0A1B0GW55 424 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 NKX6-3A6NJ46 265 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 PPIAL4DF5H284 164 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 SPINT2O43291 252 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 RP2O75695 350 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 DUX4L2P0CJ85 424 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 DUX4L3P0CJ86 424 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 DUX4L4P0CJ87 422 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 DUX4L5P0CJ88 424 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 DUX4L6P0CJ89 424 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 DUX4L7P0CJ90 424 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 PPIAL4FP0DN26 164 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 DAOP14920 347 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 CEACAM6P40199 344 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 SRPXP78539 464 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 HTD2P86397 168 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 HFEQ30201 348 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 DUX4L9Q6RFH8 374 aaPredicted RBP11.76□□□□□ -0.53
CUX1-209ENST00000487284 PPP1R1CQ8WVI7 109 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 ARL11Q969Q4 196 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 AKR1E2Q96JD6 320 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 C2orf50Q96LR7 162 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 TMEM222Q9H0R3 208 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 OR6C3Q9NZP0 311 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 DUX4Q9UBX2 424 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 PPIAL4AQ9Y536 164 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 NAV2Q8IVL1 2488 aa11.76□□□□□ -0.53
CUX1-209ENST00000487284 MPTX1A8MV57 137 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 PHF1O43189 567 aaPredicted RBP11.75□□□□□ -0.53
CUX1-209ENST00000487284 PGLYRP1O75594 196 aaPredicted RBP11.75□□□□□ -0.53
CUX1-209ENST00000487284 F12P00748 615 aaPredicted RBP11.75□□□□□ -0.53
CUX1-209ENST00000487284 IGLV2-14P01704 120 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 IGHV4-39P01824 125 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 HOXB5P09067 269 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 CGB3P0DN86 165 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 CGB7P0DN87 165 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 SLC25A4P12235 298 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 S100GP29377 79 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 EFNA4P52798 201 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 EDDM3BP56851 147 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 IL15RAQ13261 267 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 GNMTQ14749 295 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 TMEM65Q6PI78 240 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 LGI3Q8N145 548 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 FAM216BQ8N7L0 139 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 OR52L2PQ8NGH6 319 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 C18orf12Q96KH6 178 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 OR10C1Q96KK4 312 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 YLPM1P49750 1951 aaKnown RBP11.75□□□□□ -0.53
CUX1-209ENST00000487284 DOCK11Q5JSL3 2073 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 FXYD6-FXYD2A0A087WZ82 144 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 H0Y980 276 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 F2RL2O00254 374 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 TNFRSF13BO14836 293 aaPredicted RBP11.75□□□□□ -0.53
CUX1-209ENST00000487284 B3GALNT1O75752 331 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 MPC2O95563 127 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 IFNA21P01568 189 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 CXCL2P19875 107 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 UCP1P25874 307 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 MSMO1Q15800 293 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 GGNBP1Q5YKI7 109 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 C11orf87Q6NUJ2 197 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 LHFPL5Q8TAF8 219 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 NINJ1Q92982 152 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 TMEM56Q96MV1 263 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 TMEM56-RWDD3S4R434 201 aa11.75□□□□□ -0.53
CUX1-209ENST00000487284 MAP1AP78559 2803 aaPredicted RBP11.74□□□□□ -0.53
CUX1-209ENST00000487284 ARPC5O15511 151 aa11.74□□□□□ -0.53
CUX1-209ENST00000487284 OR8U9P0C7N5 309 aa11.74□□□□□ -0.53
CUX1-209ENST00000487284 RPA2P15927 270 aa11.74□□□□□ -0.53
CUX1-209ENST00000487284 F2RP25116 425 aa11.74□□□□□ -0.53
CUX1-209ENST00000487284 PSMB6P28072 239 aa11.74□□□□□ -0.53
CUX1-209ENST00000487284 MRPS11P82912 194 aaKnown RBP11.74□□□□□ -0.53
CUX1-209ENST00000487284 OR8U1Q8NH10 309 aa11.74□□□□□ -0.53
CUX1-209ENST00000487284 FAM216AQ8WUB2 273 aa11.74□□□□□ -0.53
CUX1-209ENST00000487284 GPHA2Q96T91 129 aa11.74□□□□□ -0.53
CUX1-209ENST00000487284 RAB9BQ9NP90 201 aa11.74□□□□□ -0.53
CUX1-209ENST00000487284 OR2S2Q9NQN1 319 aa11.74□□□□□ -0.53
CUX1-209ENST00000487284 CALYQ9NYX4 217 aa11.74□□□□□ -0.53
CUX1-209ENST00000487284 JPT1Q9UK76 154 aa11.74□□□□□ -0.53
CUX1-209ENST00000487284 UBE2J1Q9Y385 318 aaPredicted RBP11.74□□□□□ -0.53
CUX1-209ENST00000487284 CSMD1Q96PZ7 3565 aa11.73□□□□□ -0.53
CUX1-209ENST00000487284 L7N2F9 121 aa11.73□□□□□ -0.53
CUX1-209ENST00000487284 TMPRSS2O15393 492 aa11.73□□□□□ -0.53
CUX1-209ENST00000487284 FSTL3O95633 263 aa11.73□□□□□ -0.53
CUX1-209ENST00000487284 CDS2O95674 445 aa11.73□□□□□ -0.53
CUX1-209ENST00000487284 PPP1CCP36873 323 aaKnown RBP11.73□□□□□ -0.53
CUX1-209ENST00000487284 IAH1Q2TAA2 248 aaPredicted RBP11.73□□□□□ -0.53
CUX1-209ENST00000487284 LRRC37A5PQ49AS3 106 aa11.73□□□□□ -0.53
CUX1-209ENST00000487284 FAM53AQ6NSI3 398 aaPredicted RBP11.73□□□□□ -0.53
CUX1-209ENST00000487284 TCF23Q7RTU1 214 aa11.73□□□□□ -0.53
CUX1-209ENST00000487284 LYZL2Q7Z4W2 148 aa11.73□□□□□ -0.53
CUX1-209ENST00000487284 DRAM1Q8N682 238 aa11.73□□□□□ -0.53
CUX1-209ENST00000487284 ZNF525Q8N782 197 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms