RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 TALDO1P37837 337 aa11.82□□□□□ -0.52
USP4-212ENST00000486549 SRSF4Q08170 494 aaKnown RBP11.82□□□□□ -0.52
USP4-212ENST00000486549 ZNF816Q0VGE8 651 aaPredicted RBP11.82□□□□□ -0.52
USP4-212ENST00000486549 CDNFQ49AH0 187 aa11.82□□□□□ -0.52
USP4-212ENST00000486549 ARSJQ5FYB0 599 aaPredicted RBP11.82□□□□□ -0.52
USP4-212ENST00000486549 STEAP3Q658P3 488 aa11.82□□□□□ -0.52
USP4-212ENST00000486549 OR8H3Q8N146 312 aa11.82□□□□□ -0.52
USP4-212ENST00000486549 OR2AK2Q8NG84 335 aa11.82□□□□□ -0.52
USP4-212ENST00000486549 OR2T6Q8NHC8 308 aa11.82□□□□□ -0.52
USP4-212ENST00000486549 CFHR4Q92496 578 aa11.82□□□□□ -0.52
USP4-212ENST00000486549 SLC25A38Q96DW6 304 aa11.82□□□□□ -0.52
USP4-212ENST00000486549 YPEL2Q96QA6 119 aa11.82□□□□□ -0.52
USP4-212ENST00000486549 NAA50Q9GZZ1 169 aaKnown RBP11.82□□□□□ -0.52
USP4-212ENST00000486549 RANBP3Q9H6Z4 567 aaPredicted RBP11.82□□□□□ -0.52
USP4-212ENST00000486549 OR1A1Q9P1Q5 309 aa11.82□□□□□ -0.52
USP4-212ENST00000486549 SLC23A1Q9UHI7 598 aa11.82□□□□□ -0.52
USP4-212ENST00000486549 ZNF230Q9UIE0 474 aaPredicted RBP11.82□□□□□ -0.52
USP4-212ENST00000486549 ELF5Q9UKW6 265 aaPredicted RBP11.82□□□□□ -0.52
USP4-212ENST00000486549 ETV7Q9Y603 341 aa11.82□□□□□ -0.52
USP4-212ENST00000486549 SERPINE3A8MV23 424 aa11.81□□□□□ -0.52
USP4-212ENST00000486549 TRDCB7Z8K6 153 aa11.81□□□□□ -0.52
USP4-212ENST00000486549 ST8SIA5O15466 376 aa11.81□□□□□ -0.52
USP4-212ENST00000486549 SCGNO76038 276 aa11.81□□□□□ -0.52
USP4-212ENST00000486549 IGKV1D-33P01593 117 aa11.81□□□□□ -0.52
USP4-212ENST00000486549 IGKV1-33P01594 117 aa11.81□□□□□ -0.52
USP4-212ENST00000486549 LPLP06858 475 aa11.81□□□□□ -0.52
USP4-212ENST00000486549 FAM106CPP0CH98 169 aa11.81□□□□□ -0.52
USP4-212ENST00000486549 SCAND1P57086 179 aa11.81□□□□□ -0.52
USP4-212ENST00000486549 HABP2Q14520 560 aaPredicted RBP11.81□□□□□ -0.52
USP4-212ENST00000486549 HNF4GQ14541 408 aa11.81□□□□□ -0.52
USP4-212ENST00000486549 TGIF2LXQ8IUE1 241 aa11.81□□□□□ -0.52
USP4-212ENST00000486549 CROCCP3Q8IVE0 287 aa11.81□□□□□ -0.52
USP4-212ENST00000486549 IZUMO1Q8IYV9 350 aa11.81□□□□□ -0.52
USP4-212ENST00000486549 RTN4IP1Q8WWV3 396 aaPredicted RBP11.81□□□□□ -0.52
USP4-212ENST00000486549 ST6GALNAC6Q969X2 333 aa11.81□□□□□ -0.52
USP4-212ENST00000486549 PHF21AQ96BD5 680 aa11.81□□□□□ -0.52
USP4-212ENST00000486549 AKR1E2Q96JD6 320 aa11.81□□□□□ -0.52
USP4-212ENST00000486549 PARP12Q9H0J9 701 aaKnown RBP11.81□□□□□ -0.52
USP4-212ENST00000486549 ZNF702PQ9H963 129 aa11.81□□□□□ -0.52
USP4-212ENST00000486549 TMEM235A6NFC5 223 aa11.8□□□□□ -0.52
USP4-212ENST00000486549 FAM90A9PA6NNJ1 464 aa11.8□□□□□ -0.52
USP4-212ENST00000486549 FABP7O15540 132 aa11.8□□□□□ -0.52
USP4-212ENST00000486549 OR2F2O95006 317 aa11.8□□□□□ -0.52
USP4-212ENST00000486549 TMEM11P17152 192 aa11.8□□□□□ -0.52
USP4-212ENST00000486549 ZBTB25P24278 435 aa11.8□□□□□ -0.52
USP4-212ENST00000486549 CEACAM6P40199 344 aa11.8□□□□□ -0.52
USP4-212ENST00000486549 KIR2DS4P43632 304 aa11.8□□□□□ -0.52
USP4-212ENST00000486549 PROK1P58294 105 aa11.8□□□□□ -0.52
USP4-212ENST00000486549 BLCAPP62952 87 aa11.8□□□□□ -0.52
USP4-212ENST00000486549 ARL6IP1Q15041 203 aa11.8□□□□□ -0.52
USP4-212ENST00000486549 GPR107Q5VW38 600 aa11.8□□□□□ -0.52
USP4-212ENST00000486549 C16orf82Q7Z2V1 217 aa11.8□□□□□ -0.52
USP4-212ENST00000486549 GPR141Q7Z602 305 aa11.8□□□□□ -0.52
USP4-212ENST00000486549 DTX3Q8N9I9 347 aa11.8□□□□□ -0.52
USP4-212ENST00000486549 NUDCD2Q8WVJ2 157 aa11.8□□□□□ -0.52
USP4-212ENST00000486549 RBM14Q96PK6 669 aaKnown RBP11.8□□□□□ -0.52
USP4-212ENST00000486549 PRSS22Q9GZN4 317 aa11.8□□□□□ -0.52
USP4-212ENST00000486549 IGKV1-6A0A0C4DH72 117 aa11.79□□□□□ -0.52
USP4-212ENST00000486549 SH2D7A6NKC9 451 aaPredicted RBP11.79□□□□□ -0.52
USP4-212ENST00000486549 BET1O15155 118 aa11.79□□□□□ -0.52
USP4-212ENST00000486549 TXNL1O43396 289 aa11.79□□□□□ -0.52
USP4-212ENST00000486549 GSTT2P0CG29 244 aa11.79□□□□□ -0.52
USP4-212ENST00000486549 GSTT2BP0CG30 244 aa11.79□□□□□ -0.52
USP4-212ENST00000486549 OR3A3P47888 321 aa11.79□□□□□ -0.52
USP4-212ENST00000486549 ZNF137PP52743 207 aa11.79□□□□□ -0.52
USP4-212ENST00000486549 GNG2P59768 71 aa11.79□□□□□ -0.52
USP4-212ENST00000486549 KRTAP10-3P60369 221 aa11.79□□□□□ -0.52
USP4-212ENST00000486549 KIR2DS1Q14954 304 aa11.79□□□□□ -0.52
USP4-212ENST00000486549 HERPUD1Q15011 391 aa11.79□□□□□ -0.52
USP4-212ENST00000486549 TMEM95Q3KNT9 176 aa11.79□□□□□ -0.52
USP4-212ENST00000486549 LY6G6FQ5SQ64 297 aa11.79□□□□□ -0.52
USP4-212ENST00000486549 HACD4Q5VWC8 232 aa11.79□□□□□ -0.52
USP4-212ENST00000486549 Q6ZS46 218 aa11.79□□□□□ -0.52
USP4-212ENST00000486549 THNSL2Q86YJ6 484 aa11.79□□□□□ -0.52
USP4-212ENST00000486549 OR4A4PQ8NGN8 299 aa11.79□□□□□ -0.52
USP4-212ENST00000486549 SLC25A46Q96AG3 418 aa11.79□□□□□ -0.52
USP4-212ENST00000486549 RBMXL1Q96E39 390 aaKnown RBP11.79□□□□□ -0.52
USP4-212ENST00000486549 IFI27L2Q9H2X8 130 aa11.79□□□□□ -0.52
USP4-212ENST00000486549 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.79□□□□□ -0.52
USP4-212ENST00000486549 SPATA2Q9UM82 520 aa11.79□□□□□ -0.52
USP4-212ENST00000486549 TRAV18A0A075B6X5 111 aa11.78□□□□□ -0.52
USP4-212ENST00000486549 SAA2-SAA4A0A096LPE2 208 aa11.78□□□□□ -0.52
USP4-212ENST00000486549 ZNF736B4DX44 427 aaPredicted RBP11.78□□□□□ -0.52
USP4-212ENST00000486549 LANCL1O43813 399 aa11.78□□□□□ -0.52
USP4-212ENST00000486549 TMEM127O75204 238 aa11.78□□□□□ -0.52
USP4-212ENST00000486549 GABARAPO95166 117 aa11.78□□□□□ -0.52
USP4-212ENST00000486549 TFAP2AP05549 437 aa11.78□□□□□ -0.52
USP4-212ENST00000486549 GSTP1P09211 210 aaKnown RBP11.78□□□□□ -0.52
USP4-212ENST00000486549 SAA2P0DJI9 122 aaPredicted RBP11.78□□□□□ -0.52
USP4-212ENST00000486549 VSIG10L2P0DP72 767 aa11.78□□□□□ -0.52
USP4-212ENST00000486549 ALDH3B2P48448 385 aa11.78□□□□□ -0.52
USP4-212ENST00000486549 ZNF260Q3ZCT1 412 aa11.78□□□□□ -0.52
USP4-212ENST00000486549 ABCA11PQ4W5N1 156 aa11.78□□□□□ -0.52
USP4-212ENST00000486549 IGSF11Q5DX21 431 aa11.78□□□□□ -0.52
USP4-212ENST00000486549 C9orf152Q5JTZ5 239 aa11.78□□□□□ -0.52
USP4-212ENST00000486549 ANKRD13BQ86YJ7 626 aa11.78□□□□□ -0.52
USP4-212ENST00000486549 ODF3L1Q8IXM7 274 aa11.78□□□□□ -0.52
USP4-212ENST00000486549 KLHDC1Q8N7A1 406 aa11.78□□□□□ -0.52
USP4-212ENST00000486549 SAMD12Q8N8I0 201 aa11.78□□□□□ -0.52
USP4-212ENST00000486549 EDARADDQ8WWZ3 215 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms