RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 NUP62P37198 522 aaPredicted RBP0.66□□□□□ -2.3
VPS50-217ENST00000485140 SULT1A2P50226 295 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 UBE2KP61086 200 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 FLOT2Q14254 428 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 PDGFRLQ15198 375 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 CENPWQ5EE01 88 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 PABPC1L2AQ5JQF8 200 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 TIMM23BQ5SRD1 257 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 TTC33Q6PID6 262 aaPredicted RBP0.66□□□□□ -2.3
VPS50-217ENST00000485140 MTERF4Q7Z6M4 381 aaKnown RBP0.66□□□□□ -2.3
VPS50-217ENST00000485140 LRRC6Q86X45 466 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 ST13P4Q8IZP2 240 aaPredicted RBP0.66□□□□□ -2.3
VPS50-217ENST00000485140 OR4P4Q8NGL7 312 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 FNDC9Q8TBE3 224 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 LRRC20Q8TCA0 184 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 C10orf105Q8TEF2 133 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 TMIGD2Q96BF3 282 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 PPWD1Q96BP3 646 aaKnown RBP0.66□□□□□ -2.3
VPS50-217ENST00000485140 ZNF426Q9BUY5 554 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 TIMM21Q9BVV7 248 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 ZNF471Q9BX82 626 aaPredicted RBP0.66□□□□□ -2.3
VPS50-217ENST00000485140 GTSF1LQ9H1H1 148 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 OR51E2Q9H255 320 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 DNAJC12Q9UKB3 198 aa0.66□□□□□ -2.3
VPS50-217ENST00000485140 AMMECR1Q9Y4X0 333 aaPredicted RBP0.66□□□□□ -2.3
VPS50-217ENST00000485140 SOX21Q9Y651 276 aaPredicted RBP0.66□□□□□ -2.3
VPS50-217ENST00000485140 C11orf86A6NJI1 115 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 EFCAB9A8MZ26 197 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 C9J4A7 227 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 F8W036 122 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 PHYHO14832 338 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 ZW10O43264 779 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 NQO2P16083 231 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 NPPCP23582 126 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 CRHBPP24387 322 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 G6PCP35575 357 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 AQP5P55064 265 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 TSPEAR-AS2P59090 65 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 GTF2BQ00403 316 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 Q6ZRN7 208 aaPredicted RBP0.65□□□□□ -2.31
VPS50-217ENST00000485140 C2orf91Q6ZV80 131 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 AHSA2Q719I0 299 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 OR8B12Q8NGG6 310 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 OR5J2Q8NH18 312 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 ANGPTL6Q8NI99 470 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 SUN5Q8TC36 379 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 TMEM239Q8WW34 195 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 MIEN1Q9BRT3 115 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 HINT2Q9BX68 163 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 CYSTM1Q9H1C7 97 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 PRO2289Q9P1D8 64 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 CLEC2DQ9UHP7 191 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 RAB3GAP2Q9H2M9 1393 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 NOTCH1P46531 2555 aa0.65□□□□□ -2.31
VPS50-217ENST00000485140 FN1P02751 2386 aaKnown RBP0.64□□□□□ -2.31
VPS50-217ENST00000485140 MYO15BQ96JP2 1530 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 IGKV2-40A0A087WW87 121 aaPredicted RBP0.64□□□□□ -2.31
VPS50-217ENST00000485140 TRAV41A0A0B4J266 112 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 A0A1B0GVG6 124 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 A0A1B0GW15 77 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 POLR3GO15318 223 aaPredicted RBP0.64□□□□□ -2.31
VPS50-217ENST00000485140 IGKV2D-40P01614 121 aaPredicted RBP0.64□□□□□ -2.31
VPS50-217ENST00000485140 UCHL1P09936 223 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 CCDC172P0C7W6 258 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 ORM2P19652 201 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 PSMB3P49720 205 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 CTBP2P56545 445 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 TNNC1P63316 161 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 PSG3Q16557 428 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 TPRXLQ17RH7 258 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 TRMT12Q53H54 448 aaKnown RBP0.64□□□□□ -2.31
VPS50-217ENST00000485140 CHCHD2P9Q5T1J5 151 aaPredicted RBP0.64□□□□□ -2.31
VPS50-217ENST00000485140 LHFPL1Q86WI0 220 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 DOLPP1Q86YN1 238 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 OR51H1Q8NH63 302 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 OR5P2Q8WZ92 322 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 FGF13Q92913 245 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 ABHD14BQ96IU4 210 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 ACBD6Q9BR61 282 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 RAB1BQ9H0U4 201 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 C11orf1Q9H5F2 150 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 C16orf95Q9H693 158 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 C8orf4Q9NR00 106 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 LINC00527Q9UJ94 153 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 HHLA2Q9UM44 414 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 SNX24Q9Y343 169 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 CLUHO75153 1309 aa0.64□□□□□ -2.31
VPS50-217ENST00000485140 MEIKINA0A087WXM9 373 aa0.63□□□□□ -2.31
VPS50-217ENST00000485140 M0QYV0 167 aa0.63□□□□□ -2.31
VPS50-217ENST00000485140 LIN7AO14910 233 aaPredicted RBP0.63□□□□□ -2.31
VPS50-217ENST00000485140 UGT2B11O75310 529 aa0.63□□□□□ -2.31
VPS50-217ENST00000485140 PSMG1O95456 288 aa0.63□□□□□ -2.31
VPS50-217ENST00000485140 LDOC1O95751 146 aaPredicted RBP0.63□□□□□ -2.31
VPS50-217ENST00000485140 CD7P09564 240 aa0.63□□□□□ -2.31
VPS50-217ENST00000485140 CDK2P24941 298 aa0.63□□□□□ -2.31
VPS50-217ENST00000485140 OPRM1P35372 400 aa0.63□□□□□ -2.31
VPS50-217ENST00000485140 OR1E2P47887 323 aa0.63□□□□□ -2.31
VPS50-217ENST00000485140 RPL14P50914 215 aaKnown RBP0.63□□□□□ -2.31
VPS50-217ENST00000485140 TAS2R45P59539 299 aa0.63□□□□□ -2.31
VPS50-217ENST00000485140 ACTBP60709 375 aa0.63□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms