RNA–Protein interactions for RNA: ENST00000484203.5

PTCD3-215, Transcript of pentatricopeptide repeat domain 3, human

TSL 2

Gene PTCD3, Length 928 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-215	ENST00000484203	MAS1	P04201	325 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	CDK1	P06493	297 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	GNAO1	P09471	354 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	OR5H8	P0DN80	308 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	CD28	P10747	220 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	MGMT	P16455	207 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	PAX6	P26367	422 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	SSTR5	P35346	364 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	ZNF137P	P52743	207 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	SLC35A2	P78381	396 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	HTD2	P86397	168 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	DCTN2	Q13561	401 aa	Known RBP	4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	EBI3	Q14213	229 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	NSUN5P1	Q3KNT7	163 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	ACSM3	Q53FZ2	586 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	HSD17B12	Q53GQ0	312 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	LY6G6F	Q5SQ64	297 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	C6orf141	Q5SZD1	244 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	SYT6	Q5T7P8	510 aa	Predicted RBP	4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	MOB1B	Q7L9L4	216 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	MOB3B	Q86TA1	216 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	TGIF2LX	Q8IUE1	241 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	IZUMO1	Q8IYV9	350 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	GAPT	Q8N292	157 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	DRAM1	Q8N682	238 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	C11orf44	Q8N8P7	122 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	OR56B4	Q8NH76	319 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	PLPPR1	Q8TBJ4	325 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	UFD1	Q92890	307 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	MUL1	Q969V5	352 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	GALM	Q96C23	342 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	OR5M11	Q96RB7	305 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	CITED2	Q99967	270 aa	Predicted RBP	4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	URM1	Q9BTM9	101 aa	Known RBP	4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	MCRIP2	Q9BUT9	160 aa	Known RBP	4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	SELENOI	Q9C0D9	397 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	ACOT13	Q9NPJ3	140 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	LIN7C	Q9NUP9	197 aa	Known RBP	4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	ABRACL	Q9P1F3	81 aa		4.9	□□□□□ -1.63
PTCD3-215	ENST00000484203	IGHV1-3	A0A0C4DH29	117 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203		A0A1W2PPI3	338 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	FAM172BP	A6NC97	362 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	SERPINE3	A8MV23	424 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203		B5MCH6	92 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	C15orf65	H3BRN8	121 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	LANCL1	O43813	399 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	IGKV1D-33	P01593	117 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	IGKV1-33	P01594	117 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	IGHG2	P01859	326 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	SNRNP70	P08621	437 aa	Known RBP	4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	SRM	P19623	302 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	HTR2C	P28335	458 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	GNG10	P50151	68 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	LOXL3	P58215	753 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	GABPB1	Q06547	395 aa	Predicted RBP	4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	FOXE3	Q13461	319 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	ODF1	Q14990	250 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	MED22	Q15528	200 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	C1orf100	Q5SVJ3	147 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	FAM71F2	Q6NXP2	309 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	TEX38	Q6PEX7	206 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	UNQ9370/PRO34162	Q6UXP9	181 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	SLC25A48	Q6ZT89	311 aa	Known RBP	4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	RNF144B	Q7Z419	303 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	CEACAM19	Q7Z692	300 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	SLC35E3	Q7Z769	313 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	C5orf56	Q8N8D9	126 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	ZFP41	Q8N8Y5	198 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	OR6M1	Q8NGM8	313 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	OR13C5	Q8NGS8	318 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	RTN4IP1	Q8WWV3	396 aa	Predicted RBP	4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	DPF1	Q92782	380 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	RASL11B	Q9BPW5	248 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	TMEM59	Q9BXS4	323 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	OR2S2	Q9NQN1	319 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	NECAP2	Q9NVZ3	263 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	STEAP1	Q9UHE8	339 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	ZNF580	Q9UK33	172 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	JPT1	Q9UK76	154 aa		4.89	□□□□□ -1.63
PTCD3-215	ENST00000484203	PNMA8C	A0A1B0GUJ8	204 aa		4.88	□□□□□ -1.63
PTCD3-215	ENST00000484203		A0A1W2PPK0	400 aa		4.88	□□□□□ -1.63
PTCD3-215	ENST00000484203	NCBP2L	A6PVI3	153 aa	Known RBP	4.88	□□□□□ -1.63
PTCD3-215	ENST00000484203	C12orf77	C9JDV5	145 aa		4.88	□□□□□ -1.63
PTCD3-215	ENST00000484203	SLC22A1	O15245	554 aa		4.88	□□□□□ -1.63
PTCD3-215	ENST00000484203	RGS10	O43665	173 aa		4.88	□□□□□ -1.63
PTCD3-215	ENST00000484203	YPEL1	O60688	119 aa		4.88	□□□□□ -1.63
PTCD3-215	ENST00000484203	MRPS14	O60783	128 aa	Known RBP	4.88	□□□□□ -1.63
PTCD3-215	ENST00000484203	HBZ	P02008	142 aa		4.88	□□□□□ -1.63
PTCD3-215	ENST00000484203	AMY1A	P04745	511 aa		4.88	□□□□□ -1.63
PTCD3-215	ENST00000484203	UCHL1	P09936	223 aa		4.88	□□□□□ -1.63
PTCD3-215	ENST00000484203	ARSB	P15848	533 aa		4.88	□□□□□ -1.63
PTCD3-215	ENST00000484203	MYF6	P23409	242 aa		4.88	□□□□□ -1.63
PTCD3-215	ENST00000484203	CD24	P25063	80 aa		4.88	□□□□□ -1.63
PTCD3-215	ENST00000484203	RPS27A	P62979	156 aa	Known RBP	4.88	□□□□□ -1.63
PTCD3-215	ENST00000484203	MRPS15	P82914	257 aa	Known RBP	4.88	□□□□□ -1.63
PTCD3-215	ENST00000484203	MLLT11	Q13015	90 aa	Predicted RBP	4.88	□□□□□ -1.63
PTCD3-215	ENST00000484203	TPBG	Q13641	420 aa		4.88	□□□□□ -1.63
PTCD3-215	ENST00000484203	ARL6IP1	Q15041	203 aa		4.88	□□□□□ -1.63
PTCD3-215	ENST00000484203	LTC4S	Q16873	150 aa		4.88	□□□□□ -1.63
PTCD3-215	ENST00000484203	PNLIPRP3	Q17RR3	467 aa		4.88	□□□□□ -1.63

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