RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 ST8SIA5O15466 376 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 FCN3O75636 299 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 TOX4O94842 621 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 FABP1P07148 127 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 GSTP1P09211 210 aaKnown RBP6.8□□□□□ -1.32
USP54-212ENST00000480210 ZNF728P0DKX0 622 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 SELLP14151 372 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 NFYAP23511 347 aaPredicted RBP6.8□□□□□ -1.32
USP54-212ENST00000480210 PRTN3P24158 256 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 S100A11P31949 105 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 AKR1D1P51857 326 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 TMEM50BP56557 158 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 ERVFRD-1P60508 538 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 ARF6P62330 175 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 MRPS10P82664 201 aaKnown RBP6.8□□□□□ -1.32
USP54-212ENST00000480210 RELQ04864 619 aaPredicted RBP6.8□□□□□ -1.32
USP54-212ENST00000480210 AESQ08117 197 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 EDDM3AQ14507 147 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 SRSF7Q16629 238 aaKnown RBP eCLIP6.8□□□□□ -1.32
USP54-212ENST00000480210 PNLIPRP3Q17RR3 467 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 UBE2NLQ5JXB2 153 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 TMEM200BQ69YZ2 307 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 ZNF497Q6ZNH5 498 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 MOB1BQ7L9L4 216 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 RTN4RL2Q86UN3 420 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 RAB3CQ96E17 227 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 BEX2Q9BXY8 128 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 NKX6-2Q9C056 277 aaPredicted RBP6.8□□□□□ -1.32
USP54-212ENST00000480210 CHST6Q9GZX3 395 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 SIRPDQ9H106 197 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 LINC00574Q9H8X3 128 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 C19orf12Q9NSK7 152 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 KCNIP1Q9NZI2 227 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 OTOGQ6ZRI0 2925 aa6.8□□□□□ -1.32
USP54-212ENST00000480210 KBTBD11-OT1A0A1B0GTJ5 212 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 SOCS1O15524 211 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 XRCC3O43542 346 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 SSNA1O43805 119 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 MT-ND4P03905 459 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 TFF1P04155 84 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 CD3GP09693 182 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 CGB3P0DN86 165 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 CGB7P0DN87 165 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 FOLR2P14207 255 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 SNRPBP14678 240 aaKnown RBP6.79□□□□□ -1.32
USP54-212ENST00000480210 MMP9P14780 707 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 RAB4AP20338 218 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 PVALBP20472 110 aaPredicted RBP6.79□□□□□ -1.32
USP54-212ENST00000480210 FPR2P25090 351 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 TGFBR1P36897 503 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 GLIPR1P48060 266 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 UBA52P62987 128 aaKnown RBP6.79□□□□□ -1.32
USP54-212ENST00000480210 ATXN7L3Q14CW9 347 aaPredicted RBP6.79□□□□□ -1.32
USP54-212ENST00000480210 LGALSLQ3ZCW2 172 aaPredicted RBP6.79□□□□□ -1.32
USP54-212ENST00000480210 CHRFAM7AQ494W8 412 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 FAM209BQ5JX69 171 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 NKAPLQ5M9Q1 402 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 FAM120AOSQ5T036 256 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 GPR157Q5UAW9 335 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 CNIH2Q6PI25 160 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 HEPN1Q6WQI6 88 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 TRAPPC6BQ86SZ2 158 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 BPIFB2Q8N4F0 458 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 OR52M1Q8NGK5 317 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 OR13D1Q8NGV5 346 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 LGALS14Q8TCE9 139 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 COQ2Q96H96 371 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 CMSS1Q9BQ75 279 aaKnown RBP6.79□□□□□ -1.32
USP54-212ENST00000480210 GINS4Q9BRT9 223 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 NICN1Q9BSH3 213 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 FAAP24Q9BTP7 215 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 PECRQ9BY49 303 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 MBNL3Q9NUK0 354 aaKnown RBP6.79□□□□□ -1.32
USP54-212ENST00000480210 ONECUT1Q9UBC0 465 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 TRAPPC2LQ9UL33 140 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 HIVEP1P15822 2718 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 TLN2Q9Y4G6 2542 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 MAST4O15021 2626 aa6.79□□□□□ -1.32
USP54-212ENST00000480210 A0A0A6YYD4 124 aa6.78□□□□□ -1.32
USP54-212ENST00000480210 A0A0D9SG52 128 aa6.78□□□□□ -1.32
USP54-212ENST00000480210 UBE2QL1A1L167 161 aa6.78□□□□□ -1.32
USP54-212ENST00000480210 SMIM30A4D0T7 59 aa6.78□□□□□ -1.32
USP54-212ENST00000480210 NPIPB11E5RHQ5 1161 aa6.78□□□□□ -1.32
USP54-212ENST00000480210 SPINT2O43291 252 aa6.78□□□□□ -1.32
USP54-212ENST00000480210 GSTZ1O43708 216 aaPredicted RBP6.78□□□□□ -1.32
USP54-212ENST00000480210 SCO1O75880 301 aa6.78□□□□□ -1.32
USP54-212ENST00000480210 DIRAS3O95661 229 aa6.78□□□□□ -1.32
USP54-212ENST00000480210 TCRBP04435 133 aa6.78□□□□□ -1.32
USP54-212ENST00000480210 IL5P05113 134 aa6.78□□□□□ -1.32
USP54-212ENST00000480210 MELTFP08582 738 aa6.78□□□□□ -1.32
USP54-212ENST00000480210 HIST1H1DP16402 221 aaKnown RBP6.78□□□□□ -1.32
USP54-212ENST00000480210 SRP14P37108 136 aaKnown RBP6.78□□□□□ -1.32
USP54-212ENST00000480210 GLP1RP43220 463 aa6.78□□□□□ -1.32
USP54-212ENST00000480210 UBE2E1P51965 193 aa6.78□□□□□ -1.32
USP54-212ENST00000480210 DLX6P56179 175 aa6.78□□□□□ -1.32
USP54-212ENST00000480210 FCN2Q15485 313 aa6.78□□□□□ -1.32
USP54-212ENST00000480210 LY6G6FQ5SQ64 297 aa6.78□□□□□ -1.32
USP54-212ENST00000480210 ZNF880Q6PDB4 577 aa6.78□□□□□ -1.32
USP54-212ENST00000480210 C6orf201Q7Z4U5 140 aa6.78□□□□□ -1.32
USP54-212ENST00000480210 LILRB2Q8N423 598 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms