RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 LYSMD4Q5XG99 296 aa10.07□□□□□ -0.8
SYNE2-207ENST00000458046 RTL6Q6ICC9 239 aa10.07□□□□□ -0.8
SYNE2-207ENST00000458046 ZNF561Q8N587 486 aa10.07□□□□□ -0.8
SYNE2-207ENST00000458046 OR5L1Q8NGL2 311 aa10.07□□□□□ -0.8
SYNE2-207ENST00000458046 SECTM1Q8WVN6 248 aa10.07□□□□□ -0.8
SYNE2-207ENST00000458046 ALKBH3Q96Q83 286 aaPredicted RBP10.07□□□□□ -0.8
SYNE2-207ENST00000458046 ESRP2Q9H6T0 727 aaKnown RBP10.07□□□□□ -0.8
SYNE2-207ENST00000458046 NECAP2Q9NVZ3 263 aa10.07□□□□□ -0.8
SYNE2-207ENST00000458046 HS3ST3B1Q9Y662 390 aa10.07□□□□□ -0.8
SYNE2-207ENST00000458046 PI4KAP42356 2102 aa10.07□□□□□ -0.8
SYNE2-207ENST00000458046 IGKV1-12A0A0C4DH73 117 aa10.07□□□□□ -0.8
SYNE2-207ENST00000458046 IGKV1D-12P01611 117 aa10.07□□□□□ -0.8
SYNE2-207ENST00000458046 CD5P06127 495 aa10.07□□□□□ -0.8
SYNE2-207ENST00000458046 ZNF32P17041 273 aa10.07□□□□□ -0.8
SYNE2-207ENST00000458046 RBP2P50120 134 aa10.07□□□□□ -0.8
SYNE2-207ENST00000458046 MRPS34P82930 218 aaKnown RBP10.07□□□□□ -0.8
SYNE2-207ENST00000458046 EIF3IQ13347 325 aaKnown RBP10.07□□□□□ -0.8
SYNE2-207ENST00000458046 FOXE3Q13461 319 aa10.07□□□□□ -0.8
SYNE2-207ENST00000458046 RPS19BP1Q86WX3 136 aaKnown RBP10.07□□□□□ -0.8
SYNE2-207ENST00000458046 FBXL14Q8N1E6 418 aa10.07□□□□□ -0.8
SYNE2-207ENST00000458046 OR10AD1Q8NGE0 317 aa10.07□□□□□ -0.8
SYNE2-207ENST00000458046 OR11L1Q8NGX0 322 aa10.07□□□□□ -0.8
SYNE2-207ENST00000458046 RNASE11Q8TAA1 199 aaKnown RBP10.07□□□□□ -0.8
SYNE2-207ENST00000458046 KIRREL1Q96J84 757 aa10.07□□□□□ -0.8
SYNE2-207ENST00000458046 CSTL1Q9H114 145 aa10.07□□□□□ -0.8
SYNE2-207ENST00000458046 GAR1Q9NY12 217 aaKnown RBP10.07□□□□□ -0.8
SYNE2-207ENST00000458046 A0A0G2JMM0 328 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 A0A1W2PPB8 328 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 A0A1W2PRS3 328 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 KIR3DP1A8MWS1 328 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 SYNGR3O43761 229 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 KLF7O75840 302 aaPredicted RBP10.06□□□□□ -0.8
SYNE2-207ENST00000458046 CRYGSP22914 178 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 OR1F12Q8NHA8 337 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 FGFBP3Q8TAT2 258 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 C1QTNF5Q9BXJ0 243 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 MAP1LC3CQ9BXW4 147 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 PARP11Q9NR21 331 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 NRASP01111 189 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 CHATP28329 748 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 HTR5AP47898 357 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 ASCL1P50553 236 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 RPL15P61313 204 aaKnown RBP10.06□□□□□ -0.8
SYNE2-207ENST00000458046 ID3Q02535 119 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 ZNF616Q08AN1 781 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 TMEM187Q14656 261 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 Q6ZSR3 168 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 C5orf24Q7Z6I8 188 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 CCDC71LQ8N9Z2 235 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 C10orf35Q96D05 121 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 NAA60Q9H7X0 242 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 WFDC1Q9HC57 220 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 ST3GAL6Q9Y274 331 aa10.06□□□□□ -0.8
SYNE2-207ENST00000458046 A0A1B0GV50 99 aa10.05□□□□□ -0.8
SYNE2-207ENST00000458046 C1QL1O75973 258 aa10.05□□□□□ -0.8
SYNE2-207ENST00000458046 TSPAN15O95858 294 aa10.05□□□□□ -0.8
SYNE2-207ENST00000458046 DVL1P1P54792 670 aaPredicted RBP10.05□□□□□ -0.8
SYNE2-207ENST00000458046 RAB35Q15286 201 aa10.05□□□□□ -0.8
SYNE2-207ENST00000458046 AVPI1Q5T686 147 aa10.05□□□□□ -0.8
SYNE2-207ENST00000458046 OR14L1PQ8NHC6 308 aa10.05□□□□□ -0.8
SYNE2-207ENST00000458046 ZDHHC8Q9ULC8 765 aa10.05□□□□□ -0.8
SYNE2-207ENST00000458046 PPIAL4DF5H284 164 aa10.05□□□□□ -0.8
SYNE2-207ENST00000458046 CXCL13O43927 109 aa10.05□□□□□ -0.8
SYNE2-207ENST00000458046 CYB5R3P00387 301 aaPredicted RBP10.05□□□□□ -0.8
SYNE2-207ENST00000458046 IGHV3-9P01782 118 aa10.05□□□□□ -0.8
SYNE2-207ENST00000458046 PSG4Q00888 419 aa10.05□□□□□ -0.8
SYNE2-207ENST00000458046 NHLH2Q02577 135 aa10.05□□□□□ -0.8
SYNE2-207ENST00000458046 MIDNQ504T8 468 aa10.05□□□□□ -0.8
SYNE2-207ENST00000458046 OSR2Q8N2R0 312 aa10.05□□□□□ -0.8
SYNE2-207ENST00000458046 SLC2A9Q9NRM0 540 aa10.05□□□□□ -0.8
SYNE2-207ENST00000458046 SMPXQ9UHP9 88 aa10.05□□□□□ -0.8
SYNE2-207ENST00000458046 NSG1A0A0A6YYJ2 146 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 CBY3A6NI87 242 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 COLCA2A8K830 154 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 FAM157AC9JC47 383 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 E5RGE8 158 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 PHF1O43189 567 aaPredicted RBP10.04□□□□□ -0.8
SYNE2-207ENST00000458046 CCL11P51671 97 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 FAM3AP98173 230 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 ZNF92Q03936 586 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 AAED1Q7RTV5 226 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 FGFRL1Q8N441 504 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 WFIKKN1Q96NZ8 548 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 CLCC1Q96S66 551 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 RNF2Q99496 336 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 SH3BGRL3Q9H299 93 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 BIN3Q9NQY0 253 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 TMEM38BQ9NVV0 291 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 NSG2Q9Y328 171 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 SHANK1Q9Y566 2161 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 TRAPPC6AO75865 159 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 IGHV2-70P01814 119 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 RFPL3SP0C7P2 107 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 S100A7P31151 101 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 C11orf44Q8N8P7 122 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 UBAC2Q8NBM4 344 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 HSD17B11Q8NBQ5 300 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 EIF5A2Q9GZV4 153 aaKnown RBP10.04□□□□□ -0.8
SYNE2-207ENST00000458046 RPS10P5Q9NQ39 176 aa10.04□□□□□ -0.8
SYNE2-207ENST00000458046 CACFD1Q9UGQ2 172 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms