RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 RGNQ15493 299 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 ZSWIM7Q19AV6 140 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 HLA-DRB5Q30154 266 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 LRRC10Q5BKY1 277 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 OTPQ5XKR4 325 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 SFXN4Q6P4A7 337 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 HIST3H2AQ7L7L0 130 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 PAQR4Q8N4S7 273 aaPredicted RBP4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 ZNF433Q8N7K0 673 aaPredicted RBP4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 OR5AU1Q8NGC0 362 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 OR1L8Q8NGR8 309 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 HMGCLL1Q8TB92 370 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 PLPPR1Q8TBJ4 325 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 CLDN23Q96B33 292 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 FRG2BQ96QU4 278 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 SIX2Q9NPC8 291 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 ACP6Q9NPH0 428 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 FAM206AQ9NX38 181 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 PRNDQ9UKY0 176 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 TP53TG1Q9Y2A0 90 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 WDR87Q6ZQQ6 2873 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 CROCCQ5TZA2 2017 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 MYH10P35580 1976 aa4.04□□□□□ -1.76
CCDC88A-209ENST00000456975 A0A1W2PPK0 400 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 C7orf77A4D0Y5 90 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 LINC00473A8K010 186 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 H0YL77 283 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 J3KT08 172 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 J3QR89 54 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 TNFRSF11BO00300 401 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 CCL16O15467 120 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 TYROBPO43914 113 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 TRAPPC6AO75865 159 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 SLC35G6P0C7Q6 338 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 CT45A10P0DMU9 189 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 TFPIP10646 304 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 ATF1P18846 271 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 APOBEC1P41238 236 aaKnown RBP4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 MAGEA5P43359 124 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 CXCL12P48061 93 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 TAS2R20P59543 309 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 RPL27P61353 136 aaKnown RBP4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 SLC35A2P78381 396 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 KLRB1Q12918 225 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 LY6DQ14210 128 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 COA6Q5JTJ3 125 aaKnown RBP4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 DCAF12Q5T6F0 453 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 BCL2L15Q5TBC7 163 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 AMMECR1LQ6DCA0 310 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 Q6ZSN1 163 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 MON1BQ7L1V2 547 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 LRRC57Q8N9N7 239 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 OR2G3Q8NGZ4 309 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 THEM6Q8WUY1 208 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 RAB39BQ96DA2 213 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 PHYHIPLQ96FC7 376 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 PCED1BQ96HM7 432 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 PGLYRP2Q96PD5 576 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 PITX2Q99697 317 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 SLC25A33Q9BSK2 321 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 TM2D2Q9BX73 214 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 SLC17A9Q9BYT1 436 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 HES4Q9HCC6 221 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 MEPEQ9NQ76 525 aaPredicted RBP4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 CISHQ9NSE2 258 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 SERTAD4Q9NUC0 356 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 TMEM30AQ9NV96 361 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 CISD1Q9NZ45 108 aaKnown RBP4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 RPS6KB2Q9UBS0 482 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 MCTS1Q9ULC4 181 aaKnown RBP4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 SIGLEC7Q9Y286 467 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 HDGFL3Q9Y3E1 203 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 ZNF780BQ9Y6R6 833 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 NOTCH4Q99466 2003 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 EML5Q05BV3 1969 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 IGHV1-69-2A0A0G2JMI3 117 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 C9JAW5 83 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 H3BQ15 152 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 LYRM1O43325 122 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 MPDU1O75352 247 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 SOX14O95416 240 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 PFN1P07737 140 aaKnown RBP4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 CELA2AP08217 269 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 DANCRP0C864 163 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 AKAIN1P0CW23 69 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 HMGA1P17096 107 aaKnown RBP4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 ORM2P19652 201 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 MPGP29372 298 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 GABRA3P34903 492 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 ZNF140P52738 457 aaPredicted RBP4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 CRADDP78560 199 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 RPL24P83731 157 aaKnown RBP4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 MEF2CQ06413 473 aaPredicted RBP4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 FAM53BQ14153 422 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 KIAA1644Q3SXP7 199 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 ZNF385BQ569K4 471 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 C1orf195Q5TG92 126 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 PAQR6Q6TCH4 344 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 PQLC2Q6ZP29 291 aa4.03□□□□□ -1.76
CCDC88A-209ENST00000456975 FOXI2Q6ZQN5 318 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms