RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 GLCCI1Q86VQ1 547 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 AQP3Q92482 292 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 UBE2FQ969M7 185 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 WNT9BO14905 357 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 TIMP1P01033 207 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 SRD5A2P31213 254 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 CXCL12P48061 93 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 Q56UQ5 140 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 ACSM6Q6P461 480 aa6.32□□□□□ -1.4
VPS53-204ENST00000437048 MRPL43Q8N983 215 aaKnown RBP6.32□□□□□ -1.4
VPS53-204ENST00000437048 POLR2AP24928 1970 aaKnown RBP6.31□□□□□ -1.4
VPS53-204ENST00000437048 NRG2O14511 850 aaPredicted RBP6.31□□□□□ -1.4
VPS53-204ENST00000437048 CYBAP13498 195 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 TRAV34A0A0B4J273 112 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 AKR7A3O95154 331 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 C10orf128Q5T292 105 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 OR11H7Q8NGC8 314 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 ARPC1AQ92747 370 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 FBLN5Q9UBX5 448 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 TMEM11P17152 192 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 IER3P46695 156 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 SIGLEC14Q08ET2 396 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 ZP4Q12836 540 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 OPN3Q9H1Y3 402 aaPredicted RBP6.31□□□□□ -1.4
VPS53-204ENST00000437048 CXXC4Q9H2H0 198 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 J3QT63 122 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 TSPAN13O95857 204 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 PRDX2P32119 198 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 ZNF658BQ4V348 819 aaPredicted RBP6.31□□□□□ -1.4
VPS53-204ENST00000437048 KIRREL2Q6UWL6 708 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 TBC1D26Q86UD7 250 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 ZNF414Q96IQ9 312 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 PARP12Q9H0J9 701 aaKnown RBP6.31□□□□□ -1.4
VPS53-204ENST00000437048 SMOC1Q9H4F8 434 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 RNF122Q9H9V4 155 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 ERRFI1Q9UJM3 462 aaPredicted RBP6.31□□□□□ -1.4
VPS53-204ENST00000437048 KMT2EQ8IZD2 1858 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 FTH1P19P0C7X4 201 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 C1QTNF9P0C862 333 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 CEACAM6P40199 344 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 RSPO2Q6UXX9 243 aaPredicted RBP6.31□□□□□ -1.4
VPS53-204ENST00000437048 APOBEC4Q8WW27 367 aaKnown RBP6.31□□□□□ -1.4
VPS53-204ENST00000437048 WNT16Q9UBV4 365 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 MMP23AO75900 390 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 ELNP15502 786 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 FAHP16930 419 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 EMP1P54849 157 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 GCSAMQ8N6F7 178 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 RDH5Q92781 318 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 VN1R1Q9GZP7 353 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 PLXNB1O43157 2135 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 FAM166AQ6J272 317 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 HSD17B8Q92506 261 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 PAXXQ9BUH6 204 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 ADRA2AP08913 450 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 CD300CQ08708 224 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 Q5PR19 223 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 OR11G2Q8NGC1 345 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 MRGPRDQ8TDS7 321 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 GPR27Q9NS67 375 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 CKS2P33552 79 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 KIAA0040Q15053 153 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 OR10J3Q5JRS4 329 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 LDLRAD3Q86YD5 345 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 TMEM40Q8WWA1 233 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 LMO7DNF2Z398 122 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 HYPMO75409 117 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 UCP2P55851 309 aa6.31□□□□□ -1.4
VPS53-204ENST00000437048 MRPL18Q9H0U6 180 aaKnown RBP6.31□□□□□ -1.4
VPS53-204ENST00000437048 RAB29O14966 203 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 SELENOPP49908 381 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 ZNF146Q15072 292 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 TIMM23BQ5SRD1 257 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 OR13H1Q8NG92 308 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 KISS1RQ969F8 398 aaPredicted RBP6.3□□□□□ -1.4
VPS53-204ENST00000437048 KCNS1Q96KK3 526 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 DERL1Q9BUN8 251 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 SSBP4Q9BWG4 385 aaPredicted RBP6.3□□□□□ -1.4
VPS53-204ENST00000437048 GNB4Q9HAV0 340 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 TET1Q8NFU7 2136 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 TRBV24-1A0A075B6N3 115 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 FGF17O60258 216 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 MGAT2Q10469 447 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 ZNF79Q15937 498 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 GNB1LQ9BYB4 327 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 PNLIPP16233 465 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 PAQR9Q6ZVX9 377 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.3□□□□□ -1.4
VPS53-204ENST00000437048 ELSPBP1Q96BH3 223 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 SARGQ9BW04 601 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 ZFP64Q9NPA5 681 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 FCMRO60667 390 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 RND3P61587 244 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 LDLRAD1Q5T700 205 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 MARCH3Q86UD3 253 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 MSRB3Q8IXL7 192 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 OR4P4Q8NGL7 312 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 GP6Q9HCN6 339 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 TRBV5-5A0A0J9YX44 114 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 OR2J3O76001 311 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms