RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 PDGFBP01127 241 aaPredicted RBP9.1□□□□□ -0.95
USP54-204ENST00000422491 WNT2P09544 360 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 CD99P14209 185 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 PPP1CBP62140 327 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 DEFB133Q30KQ1 61 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 CARFQ8N187 725 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 OR1K1Q8NGR3 316 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 HS3ST6Q96QI5 342 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 ZNF391Q9UJN7 358 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 TP53TG3Q9ULZ0 132 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 ZNF816-ZNF321PA0A0X1KG74 233 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 C1QTNF9BB2RNN3 333 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 IGKV1-5P01602 117 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 CA3P07451 260 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 BCL3P20749 454 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 CLDN15P56746 228 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 SOX8P57073 446 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 OR1D5P58170 312 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 LINC00310P59036 64 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 SLC38A11Q08AI6 406 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 ZNF324BQ6AW86 544 aaPredicted RBP9.1□□□□□ -0.95
USP54-204ENST00000422491 LINC01551Q86U37 167 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 CMTM2Q8TAZ6 248 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 DTD1Q8TEA8 209 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 HLA-CQ95604 372 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 ZNF501Q96CX3 271 aaPredicted RBP9.1□□□□□ -0.95
USP54-204ENST00000422491 NEIL1Q96FI4 390 aaPredicted RBP9.1□□□□□ -0.95
USP54-204ENST00000422491 ASXL3Q9C0F0 2248 aa9.1□□□□□ -0.95
USP54-204ENST00000422491 CD300LBA8K4G0 201 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 DKK1O94907 266 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 IGLV3-19P01714 112 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 FOXL1Q12952 345 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 OR5I1Q13606 314 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 SPANXN5Q5MJ07 72 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 FBXW9Q5XUX1 488 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 BTF3L4Q96K17 158 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 TECTBQ96PL2 329 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 STRADBQ9C0K7 418 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 ASCL3Q9NQ33 180 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 AURKAIP1Q9NWT8 199 aaPredicted RBP9.09□□□□□ -0.95
USP54-204ENST00000422491 OR2W1Q9Y3N9 320 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 ARHGAP21Q5T5U3 1957 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 IGLV3-12A0A075B6K2 115 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 HSPB6O14558 160 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 LINC01565O15544 149 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 PAGE4O60829 102 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 VAMP5O95183 116 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 PATE4P0C8F1 98 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 ZNF32P17041 273 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 CD82P27701 267 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 EPHA8P29322 1005 aaPredicted RBP9.09□□□□□ -0.95
USP54-204ENST00000422491 S100GP29377 79 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 ADMP35318 185 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 TMEM183BQ1AE95 376 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 ZNF468Q5VIY5 522 aaPredicted RBP9.09□□□□□ -0.95
USP54-204ENST00000422491 PCED1AQ9H1Q7 454 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 IL36RNQ9UBH0 155 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 MMP17Q9ULZ9 603 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 ZFP30Q9Y2G7 519 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 PAM16Q9Y3D7 125 aa9.09□□□□□ -0.95
USP54-204ENST00000422491 IGHV1OR21-1A0A087WYE8 117 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 HS3ST1O14792 307 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 TMPRSS2O15393 492 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 IGLV2-14P01704 120 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 ESDP10768 282 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 YPEL3P61236 119 aaPredicted RBP9.08□□□□□ -0.96
USP54-204ENST00000422491 FGF12P61328 243 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 SELENOTP62341 195 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 RANP62826 216 aaKnown RBP9.08□□□□□ -0.96
USP54-204ENST00000422491 TMEM14EPQ6UXP3 125 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 C20orf204Q6ZNR8 217 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 NUFIP2Q7Z417 695 aaKnown RBP9.08□□□□□ -0.96
USP54-204ENST00000422491 OR5T1Q8NG75 326 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 OR51B6Q9H340 312 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 FGF21Q9NSA1 209 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 ELOVL5Q9NYP7 299 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 LAMA1P25391 3075 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 GRIFINA4D1Z8 144 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 TNFSF11O14788 317 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 SIAH2O43255 324 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 EDN3P14138 238 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 CDKN1AP38936 164 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 COMPP49747 757 aaPredicted RBP9.08□□□□□ -0.96
USP54-204ENST00000422491 PAFAH1B2P68402 229 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 TRA2AQ13595 282 aaKnown RBP eCLIP9.08□□□□□ -0.96
USP54-204ENST00000422491 PRAMEF20Q5VT98 475 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 TCF23Q7RTU1 214 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 ZDHHC23Q8IYP9 409 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 OR10G9Q8NGN4 311 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 OR10G7Q8NGN6 311 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 EML6Q6ZMW3 1958 aa9.08□□□□□ -0.96
USP54-204ENST00000422491 LNP1A1A4G5 178 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 CD38P28907 300 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 TFPI2P48307 235 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 TPPP2P59282 170 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 PSG4Q00888 419 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 BATFQ16520 125 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 COL5A1-AS1Q5SY13 56 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 OR8G2PQ6IF36 304 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 SPACA9Q96E40 222 aaPredicted RBP9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms