RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 A0A1W2PRD5 423 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 A0A1W2PRF3 423 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 A0A1W2PRM7 423 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 PLPP2O43688 288 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 FHITP49789 147 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 SLC23A3Q6PIS1 610 aa11.76□□□□□ -0.53
CCDC88A-204ENST00000413716 RPS27P42677 84 aaKnown RBP11.75□□□□□ -0.53
CCDC88A-204ENST00000413716 RPS4XP62701 263 aaKnown RBP11.75□□□□□ -0.53
CCDC88A-204ENST00000413716 LHFPL4Q7Z7J7 247 aa11.75□□□□□ -0.53
CCDC88A-204ENST00000413716 OR1K1Q8NGR3 316 aa11.75□□□□□ -0.53
CCDC88A-204ENST00000413716 ZGLP1P0C6A0 271 aa11.75□□□□□ -0.53
CCDC88A-204ENST00000413716 MVB12AQ96EY5 273 aa11.75□□□□□ -0.53
CCDC88A-204ENST00000413716 MBNL2Q5VZF2 373 aaKnown RBP11.75□□□□□ -0.53
CCDC88A-204ENST00000413716 LHX8Q68G74 356 aa11.75□□□□□ -0.53
CCDC88A-204ENST00000413716 GMLQ99445 158 aa11.75□□□□□ -0.53
CCDC88A-204ENST00000413716 TRGV5A0A0B4J1U4 118 aa11.75□□□□□ -0.53
CCDC88A-204ENST00000413716 C8orf44Q96CB5 159 aa11.75□□□□□ -0.53
CCDC88A-204ENST00000413716 SIGMAR1Q99720 223 aa11.75□□□□□ -0.53
CCDC88A-204ENST00000413716 DHHO43323 396 aa11.75□□□□□ -0.53
CCDC88A-204ENST00000413716 DEGS2Q6QHC5 323 aa11.75□□□□□ -0.53
CCDC88A-204ENST00000413716 FAM74A4Q5TZK3 123 aa11.75□□□□□ -0.53
CCDC88A-204ENST00000413716 ATAD5Q96QE3 1844 aa11.75□□□□□ -0.53
CCDC88A-204ENST00000413716 PAX2Q02962 417 aa11.75□□□□□ -0.53
CCDC88A-204ENST00000413716 ELOVL5Q9NYP7 299 aa11.75□□□□□ -0.53
CCDC88A-204ENST00000413716 MALP21145 153 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 PTGESO14684 152 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 IGHV4-39P01824 125 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 SH2D5Q6ZV89 423 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 APOMO95445 188 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 ZNF688P0C7X2 276 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 MRGPRFQ96AM1 343 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 ID4P47928 161 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 SRSF6Q13247 344 aaKnown RBP11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 ZNF774Q6NX45 483 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 SCNM1Q9BWG6 230 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 TOPAZ1Q8N9V7 1692 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 GFYI3L273 518 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 FGF17O60258 216 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 SELENOPP49908 381 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 TMEM211Q6ICI0 200 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 ATOH7Q8N100 152 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 FGF14Q92915 247 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 ORAI1Q96D31 301 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 PRSS27Q9BQR3 290 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 TJP1Q07157 1748 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 CGB1A6NKQ9 187 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 SYNGR1O43759 233 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 TRGC2P03986 189 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 RAE1P78406 368 aaKnown RBP11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 PDCD1Q15116 288 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 ZNF107Q9UII5 783 aaPredicted RBP11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 LOXL2Q9Y4K0 774 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 ALPK2Q86TB3 2170 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 TRBV23-1A0A0A0MS06 115 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 CX3CL1P78423 397 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 TXNDC17Q9BRA2 123 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 IL20Q9NYY1 176 aa11.74□□□□□ -0.53
CCDC88A-204ENST00000413716 H7C1H1 209 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 SIGLEC5O15389 551 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 HBBP68871 147 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 WDR38Q5JTN6 314 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 NTMQ9P121 344 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 IL36RNQ9UBH0 155 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 TNFSF15O95150 251 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 FOXF1Q12946 379 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 GUCA2BQ16661 112 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 ZNF117Q03924 483 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 NXT2Q9NPJ8 142 aaKnown RBP11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 CACNA1BQ00975 2339 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 TRAV8-6A0A0B4J262 113 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 LAMTOR1Q6IAA8 161 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 TREM2Q9NZC2 230 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 GAPTQ8N292 157 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 RTN4RQ9BZR6 473 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 FSCN3Q9NQT6 498 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 FGF9P31371 208 aaPredicted RBP11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 CAPZBP47756 277 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 TMEM50BP56557 158 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 EWSR1Q01844 656 aaKnown RBP eCLIP11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 CFAP161Q6P656 301 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 TRIOBPQ9H2D6 2365 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 MEF2BQ02080 365 aaPredicted RBP11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 PTOV1Q86YD1 416 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 VKORC1L1Q8N0U8 176 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 C10orf35Q96D05 121 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 PCGF1Q9BSM1 259 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 LPAR2Q9HBW0 351 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 KCNE3Q9Y6H6 103 aa11.73□□□□□ -0.53
CCDC88A-204ENST00000413716 FAM90A27PA6NNH2 459 aa11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 RRHO14718 337 aa11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 GDF9O60383 454 aa11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 TM4SF1P30408 202 aa11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 CTAG1AP78358 180 aa11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 LURAP1LQ8IV03 231 aa11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 OR11G2Q8NGC1 345 aa11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 CEACAM18A8MTB9 384 aa11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 IGF2P01344 180 aa11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 HOXA5P20719 270 aa11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 CRYBB2P43320 205 aa11.72□□□□□ -0.53
CCDC88A-204ENST00000413716 ZNF714Q96N38 554 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms