RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 MFSD2BA6NFX1 497 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 MPTX1A8MV57 137 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 TRDCB7Z8K6 153 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 F5H0A9 414 aaPredicted RBP11.17□□□□□ -0.62
LIMS1-204ENST00000409441 NDUFS8O00217 210 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 NXPH2O95156 264 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 TK1P04183 234 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 CD80P33681 288 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 MDH2P40926 338 aaKnown RBP11.17□□□□□ -0.62
LIMS1-204ENST00000409441 GPR6P46095 362 aaPredicted RBP11.17□□□□□ -0.62
LIMS1-204ENST00000409441 RND3P61587 244 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 SRPXP78539 464 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 RAB32Q13637 225 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 IAH1Q2TAA2 248 aaPredicted RBP11.17□□□□□ -0.62
LIMS1-204ENST00000409441 Q5PR19 223 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 AVPI1Q5T686 147 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 GGNBP1Q5YKI7 109 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 ZNF880Q6PDB4 577 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 LIAT1Q6ZQX7 453 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 LGI3Q8N145 548 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 SUMF2Q8NBJ7 301 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 LRRC20Q8TCA0 184 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 NEK7Q8TDX7 302 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 REG4Q9BYZ8 158 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 HES4Q9HCC6 221 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 ZFP57Q9NU63 452 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 SDHAF2Q9NX18 166 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 WIPI2Q9Y4P8 454 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 OOEPA6NGQ2 149 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 H7C1Q1 480 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 LGALS8O00214 317 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 FSTL3O95633 263 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 OR5AC1P0C628 307 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 TPT1P13693 172 aaKnown RBP11.17□□□□□ -0.62
LIMS1-204ENST00000409441 SMCO1Q147U7 214 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 SHEQ5VZ18 495 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 ACP7Q6ZNF0 438 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 HSD17B13Q7Z5P4 300 aaPredicted RBP11.17□□□□□ -0.62
LIMS1-204ENST00000409441 EIF4E3Q8N5X7 224 aaKnown RBP11.17□□□□□ -0.62
LIMS1-204ENST00000409441 OR5T2Q8NGG2 359 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 OR1S1Q8NH92 325 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 CXorf58Q96LI9 332 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 PIMREGQ9BSJ6 248 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 SHARPINQ9H0F6 387 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 OR5AC2Q9NZP5 309 aa11.17□□□□□ -0.62
LIMS1-204ENST00000409441 SETXQ7Z333 2677 aaKnown RBP11.16□□□□□ -0.62
LIMS1-204ENST00000409441 IGHV4-30-2A0A087WSY4 118 aa11.16□□□□□ -0.62
LIMS1-204ENST00000409441 TRAV38-1A0A0B4J264 116 aa11.16□□□□□ -0.62
LIMS1-204ENST00000409441 TAAR5O14804 337 aa11.16□□□□□ -0.62
LIMS1-204ENST00000409441 TUSC2O75896 110 aa11.16□□□□□ -0.62
LIMS1-204ENST00000409441 IGHV2-70P01814 119 aa11.16□□□□□ -0.62
LIMS1-204ENST00000409441 MUC1P15941 1255 aaPredicted RBP11.16□□□□□ -0.62
LIMS1-204ENST00000409441 PHLDA2Q53GA4 152 aa11.16□□□□□ -0.62
LIMS1-204ENST00000409441 PAN3Q58A45 887 aaKnown RBP11.16□□□□□ -0.62
LIMS1-204ENST00000409441 IGSF11Q5DX21 431 aa11.16□□□□□ -0.62
LIMS1-204ENST00000409441 TEX36Q5VZQ5 186 aa11.16□□□□□ -0.62
LIMS1-204ENST00000409441 MOB1BQ7L9L4 216 aa11.16□□□□□ -0.62
LIMS1-204ENST00000409441 FAM90A1Q86YD7 464 aa11.16□□□□□ -0.62
LIMS1-204ENST00000409441 KRTAP1-3Q8IUG1 177 aa11.16□□□□□ -0.62
LIMS1-204ENST00000409441 OR4A4PQ8NGN8 299 aa11.16□□□□□ -0.62
LIMS1-204ENST00000409441 MRPL30Q8TCC3 161 aaKnown RBP11.16□□□□□ -0.62
LIMS1-204ENST00000409441 C18orf12Q96KH6 178 aa11.16□□□□□ -0.62
LIMS1-204ENST00000409441 BPESC1Q9GZL8 116 aa11.16□□□□□ -0.62
LIMS1-204ENST00000409441 DNTTIP1Q9H147 329 aa11.16□□□□□ -0.62
LIMS1-204ENST00000409441 GSKIPQ9P0R6 139 aa11.16□□□□□ -0.62
LIMS1-204ENST00000409441 IL36RNQ9UBH0 155 aa11.16□□□□□ -0.62
LIMS1-204ENST00000409441 TRAV24A0A0B4J272 114 aa11.15□□□□□ -0.62
LIMS1-204ENST00000409441 VWC2LB2RUY7 222 aa11.15□□□□□ -0.62
LIMS1-204ENST00000409441 DEGS1O15121 323 aa11.15□□□□□ -0.62
LIMS1-204ENST00000409441 KCNJ3P48549 501 aa11.15□□□□□ -0.62
LIMS1-204ENST00000409441 EIF5AP63241 154 aaKnown RBP11.15□□□□□ -0.62
LIMS1-204ENST00000409441 SMIM21Q3B7S5 101 aa11.15□□□□□ -0.62
LIMS1-204ENST00000409441 Q6P435 159 aa11.15□□□□□ -0.62
LIMS1-204ENST00000409441 ZNF565Q8N9K5 539 aa11.15□□□□□ -0.62
LIMS1-204ENST00000409441 MSI2Q96DH6 328 aaKnown RBP11.15□□□□□ -0.62
LIMS1-204ENST00000409441 RRNAD1Q96FB5 475 aaKnown RBP11.15□□□□□ -0.62
LIMS1-204ENST00000409441 PCDHB10Q9UN67 800 aa11.15□□□□□ -0.62
LIMS1-204ENST00000409441 CCDC168Q8NDH2 2452 aa11.15□□□□□ -0.62
LIMS1-204ENST00000409441 MAP1AP78559 2803 aaPredicted RBP11.15□□□□□ -0.62
LIMS1-204ENST00000409441 GPR31O00270 319 aa11.14□□□□□ -0.63
LIMS1-204ENST00000409441 TNFRSF13BO14836 293 aaPredicted RBP11.14□□□□□ -0.63
LIMS1-204ENST00000409441 MPPED1O15442 326 aa11.14□□□□□ -0.63
LIMS1-204ENST00000409441 DEDDO75618 318 aa11.14□□□□□ -0.63
LIMS1-204ENST00000409441 GYPAP02724 150 aa11.14□□□□□ -0.63
LIMS1-204ENST00000409441 PSG2P11465 335 aa11.14□□□□□ -0.63
LIMS1-204ENST00000409441 DUSP1P28562 367 aa11.14□□□□□ -0.63
LIMS1-204ENST00000409441 S100A10P60903 97 aa11.14□□□□□ -0.63
LIMS1-204ENST00000409441 HLA-DRB3P79483 266 aa11.14□□□□□ -0.63
LIMS1-204ENST00000409441 SPIN3Q5JUX0 258 aa11.14□□□□□ -0.63
LIMS1-204ENST00000409441 LDLRAD3Q86YD5 345 aa11.14□□□□□ -0.63
LIMS1-204ENST00000409441 CABLES2Q9BTV7 478 aa11.14□□□□□ -0.63
LIMS1-204ENST00000409441 CYTL1Q9NRR1 136 aa11.14□□□□□ -0.63
LIMS1-204ENST00000409441 TMED3Q9Y3Q3 217 aa11.14□□□□□ -0.63
LIMS1-204ENST00000409441 PRRC2AP48634 2157 aaKnown RBP11.14□□□□□ -0.63
LIMS1-204ENST00000409441 PIGBOS1A0A0B4J2F0 54 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 DUXBA0A1W2PPF3 345 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 KRBOX1C9JBD0 128 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 NPIPB11E5RHQ5 1161 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 NDUFA2O43678 99 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 TFF1P04155 84 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms