RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 FAM106CPP0CH98 169 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 HSPE1P61604 102 aaKnown RBP5.31□□□□□ -1.56
SCN1A-203ENST00000409050 RPL8P62917 257 aaKnown RBP5.31□□□□□ -1.56
SCN1A-203ENST00000409050 ZNF146Q15072 292 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 OR4A5Q8NH83 315 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 CA5BP1Q8WTZ4 195 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 TAF15Q92804 592 aaKnown RBP eCLIP5.31□□□□□ -1.56
SCN1A-203ENST00000409050 ADAT3Q96EY9 351 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-203ENST00000409050 METTL26Q96S19 204 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 PRO1933Q9H354 126 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 VSIG4Q9Y279 399 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 C16orf97H3BN30 126 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 RBFOX2O43251 390 aaKnown RBP eCLIP5.31□□□□□ -1.56
SCN1A-203ENST00000409050 ATP5LO75964 103 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 KBTBD11O94819 623 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 LEPROTL1O95214 131 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 TYMSP04818 313 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 DANCRP0C864 163 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 ZNF506Q5JVG8 444 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 SLC16A13Q7RTY0 426 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 OR2J1Q9GZK6 312 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 CXCL16Q9H2A7 254 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 LPAR2Q9HBW0 351 aa5.31□□□□□ -1.56
SCN1A-203ENST00000409050 CDX4O14627 284 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-203ENST00000409050 MFAP4P55083 255 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 PLP1P60201 277 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 RELQ04864 619 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-203ENST00000409050 RNFT1Q5M7Z0 435 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 SLC25A47Q6Q0C1 308 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 MRPL52Q86TS9 123 aaKnown RBP5.3□□□□□ -1.56
SCN1A-203ENST00000409050 OR10S1Q8NGN2 331 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 ZNF714Q96N38 554 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 LINC00470Q9BZP3 86 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 H3BMH7 237 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 ARG1P05089 322 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 GLIPR1P48060 266 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 RPS4XP62701 263 aaKnown RBP5.3□□□□□ -1.56
SCN1A-203ENST00000409050 MEF2CQ06413 473 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-203ENST00000409050 HERPUD1Q15011 391 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 SPNS3Q6ZMD2 512 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 TMEM136Q6ZRR5 245 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 OR1N2Q8NGR9 330 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 PRELID3AQ96N28 172 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 OR4C12Q96R67 309 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 MYO18AQ92614 2054 aaKnown RBP5.3□□□□□ -1.56
SCN1A-203ENST00000409050 CEACAM18A8MTB9 384 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 ITGBL1O95965 494 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-203ENST00000409050 DRD3P35462 400 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 MFAP2P55001 183 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 GVQW1Q8N7I0 195 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 ALKBH7Q9BT30 221 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-203ENST00000409050 PLSCR2Q9NRY7 297 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 DDX60LQ5H9U9 1706 aaKnown RBP5.3□□□□□ -1.56
SCN1A-203ENST00000409050 DOCK2Q92608 1830 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 DDTP30046 118 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 NCMAPQ5T1S8 102 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 LEMD1Q68G75 181 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 LYZL2Q7Z4W2 148 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 LDLRAD3Q86YD5 345 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 CT55Q8WUE5 264 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 WNT2BQ93097 391 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 MRGPRFQ96AM1 343 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 PLAC1Q9HBJ0 212 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 MOB4Q9Y3A3 225 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 CXCL3P19876 107 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 PRDX2P32119 198 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 FGF8P55075 233 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-203ENST00000409050 SPATA46Q5T0L3 261 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 ZNF660Q6AZW8 331 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-203ENST00000409050 GPR82Q96P67 336 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 ARRDC1-AS1Q9H2J1 176 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 TMEM56-RWDD3S4R434 201 aa5.3□□□□□ -1.56
SCN1A-203ENST00000409050 TCL1AP56279 114 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 GUCA2BQ16661 112 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 PCSK4Q6UW60 755 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 MYEOVQ96EZ4 313 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 G6PC2Q9NQR9 355 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 TM4SF5O14894 197 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 CT62P0C5K7 136 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 C10orf128Q5T292 105 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 C1orf185Q5T7R7 199 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 DYNLRB2Q8TF09 96 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 QTRT1Q9BXR0 403 aaKnown RBP5.29□□□□□ -1.56
SCN1A-203ENST00000409050 DNAJC4Q9NNZ3 241 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 SLC25A10Q9UBX3 287 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-203ENST00000409050 KLK13Q9UKR3 277 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 A0A1B0GTH9 108 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 PRR33A8MZF0 331 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 C1QTNF9BB2RNN3 333 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 HKR1P10072 659 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 FGF5P12034 268 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 MUC1P15941 1255 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-203ENST00000409050 LGALS3P17931 250 aaKnown RBP5.29□□□□□ -1.56
SCN1A-203ENST00000409050 GPX4P36969 197 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-203ENST00000409050 PGFP49763 221 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 TAS2R60P59551 318 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 AESQ08117 197 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 SPATA45Q537H7 98 aa5.29□□□□□ -1.56
SCN1A-203ENST00000409050 HIKESHIQ53FT3 197 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms