RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 HBE1P02100 147 aa17.79■□□□□ 0.44
CTCF-202ENST00000401394 FAM3BP58499 235 aaPredicted RBP17.79■□□□□ 0.44
CTCF-202ENST00000401394 H1FOOQ8IZA3 346 aaPredicted RBP17.79■□□□□ 0.44
CTCF-202ENST00000401394 PSMF1Q92530 271 aa17.79■□□□□ 0.44
CTCF-202ENST00000401394 CA6P23280 308 aa17.78■□□□□ 0.44
CTCF-202ENST00000401394 FKBP2P26885 142 aaKnown RBP17.78■□□□□ 0.44
CTCF-202ENST00000401394 ZNF66Q6ZN08 573 aa17.78■□□□□ 0.44
CTCF-202ENST00000401394 OR8G5Q8NG78 346 aa17.78■□□□□ 0.44
CTCF-202ENST00000401394 XKRY2A2RUG3 117 aa17.78■□□□□ 0.44
CTCF-202ENST00000401394 CD300LBA8K4G0 201 aa17.78■□□□□ 0.44
CTCF-202ENST00000401394 REC114Q7Z4M0 266 aa17.78■□□□□ 0.44
CTCF-202ENST00000401394 IFI44Q8TCB0 444 aa17.78■□□□□ 0.44
CTCF-202ENST00000401394 SVILO95425 2214 aa17.78■□□□□ 0.44
CTCF-202ENST00000401394 LOC102723996A0A087X1L8 192 aa17.77■□□□□ 0.44
CTCF-202ENST00000401394 C1QTNF9BB2RNN3 333 aa17.77■□□□□ 0.44
CTCF-202ENST00000401394 P04436 131 aa17.77■□□□□ 0.44
CTCF-202ENST00000401394 RND2P52198 227 aa17.77■□□□□ 0.44
CTCF-202ENST00000401394 OR51G1Q8NGK1 321 aa17.77■□□□□ 0.44
CTCF-202ENST00000401394 SAP25Q8TEE9 199 aa17.77■□□□□ 0.44
CTCF-202ENST00000401394 TMEM204Q9BSN7 226 aa17.77■□□□□ 0.44
CTCF-202ENST00000401394 CLN8Q9UBY8 286 aa17.77■□□□□ 0.44
CTCF-202ENST00000401394 FUT9Q9Y231 359 aa17.77■□□□□ 0.44
CTCF-202ENST00000401394 KRASP01116 189 aa17.77■□□□□ 0.44
CTCF-202ENST00000401394 OR4A8P0C604 315 aa17.77■□□□□ 0.44
CTCF-202ENST00000401394 PNPLA5Q7Z6Z6 429 aaPredicted RBP17.77■□□□□ 0.44
CTCF-202ENST00000401394 TGIF2LXQ8IUE1 241 aa17.77■□□□□ 0.44
CTCF-202ENST00000401394 MKXQ8IYA7 352 aa17.77■□□□□ 0.44
CTCF-202ENST00000401394 OR10A7Q8NGE5 316 aa17.77■□□□□ 0.44
CTCF-202ENST00000401394 M1APQ8TC57 530 aa17.77■□□□□ 0.44
CTCF-202ENST00000401394 ADGRG7Q96K78 797 aa17.77■□□□□ 0.44
CTCF-202ENST00000401394 SF3B5Q9BWJ5 86 aaKnown RBP17.77■□□□□ 0.44
CTCF-202ENST00000401394 TOX3O15405 576 aaPredicted RBP17.76■□□□□ 0.43
CTCF-202ENST00000401394 MRPL33O75394 65 aaKnown RBP17.76■□□□□ 0.43
CTCF-202ENST00000401394 CRYAAP02489 173 aa17.76■□□□□ 0.43
CTCF-202ENST00000401394 PKIAP61925 76 aa17.76■□□□□ 0.43
CTCF-202ENST00000401394 GCSAMLQ5JQS6 135 aa17.76■□□□□ 0.43
CTCF-202ENST00000401394 NCR3LG1Q68D85 454 aa17.76■□□□□ 0.43
CTCF-202ENST00000401394 ZNF808Q8N4W9 903 aaPredicted RBP17.76■□□□□ 0.43
CTCF-202ENST00000401394 DLL3Q9NYJ7 618 aa17.76■□□□□ 0.43
CTCF-202ENST00000401394 CLDN1O95832 211 aa17.76■□□□□ 0.43
CTCF-202ENST00000401394 CHRNA7P36544 502 aa17.76■□□□□ 0.43
CTCF-202ENST00000401394 FIP1L1Q6UN15 594 aaKnown RBP17.76■□□□□ 0.43
CTCF-202ENST00000401394 ZDHHC16Q969W1 377 aa17.76■□□□□ 0.43
CTCF-202ENST00000401394 PLPPR2Q96GM1 343 aa17.76■□□□□ 0.43
CTCF-202ENST00000401394 CDH20Q9HBT6 801 aa17.76■□□□□ 0.43
CTCF-202ENST00000401394 PRSS50Q9UI38 385 aa17.76■□□□□ 0.43
CTCF-202ENST00000401394 EREGO14944 169 aa17.76■□□□□ 0.43
CTCF-202ENST00000401394 DFFBO76075 338 aa17.76■□□□□ 0.43
CTCF-202ENST00000401394 RPL23P62829 140 aaKnown RBP17.76■□□□□ 0.43
CTCF-202ENST00000401394 ZNF816Q0VGE8 651 aaPredicted RBP17.76■□□□□ 0.43
CTCF-202ENST00000401394 CEACAM21Q3KPI0 293 aa17.76■□□□□ 0.43
CTCF-202ENST00000401394 SPSB4Q96A44 273 aa17.76■□□□□ 0.43
CTCF-202ENST00000401394 MED13Q9UHV7 2174 aa17.75■□□□□ 0.43
CTCF-202ENST00000401394 CFIP05156 583 aa17.75■□□□□ 0.43
CTCF-202ENST00000401394 PFN1P07737 140 aaKnown RBP17.75■□□□□ 0.43
CTCF-202ENST00000401394 TFF3Q07654 80 aa17.75■□□□□ 0.43
CTCF-202ENST00000401394 SLC39A9Q9NUM3 307 aa17.75■□□□□ 0.43
CTCF-202ENST00000401394 WASF3Q9UPY6 502 aa17.75■□□□□ 0.43
CTCF-202ENST00000401394 FAM166BA8MTA8 275 aa17.75■□□□□ 0.43
CTCF-202ENST00000401394 TSTD3H0UI37 97 aa17.75■□□□□ 0.43
CTCF-202ENST00000401394 G6PCP35575 357 aa17.75■□□□□ 0.43
CTCF-202ENST00000401394 FOXO1Q12778 655 aa17.75■□□□□ 0.43
CTCF-202ENST00000401394 SSX2Q16385 188 aa17.75■□□□□ 0.43
CTCF-202ENST00000401394 OR4F5Q8NH21 305 aa17.75■□□□□ 0.43
CTCF-202ENST00000401394 OR4F4Q96R69 305 aa17.75■□□□□ 0.43
CTCF-202ENST00000401394 WDR61Q9GZS3 305 aaKnown RBP17.75■□□□□ 0.43
CTCF-202ENST00000401394 ELOA3CA0A087WX78 387 aaPredicted RBP17.74■□□□□ 0.43
CTCF-202ENST00000401394 KIR2DS1A0A191URI9 304 aa17.74■□□□□ 0.43
CTCF-202ENST00000401394 CYTIPO60759 359 aa17.74■□□□□ 0.43
CTCF-202ENST00000401394 HNF1AP20823 631 aa17.74■□□□□ 0.43
CTCF-202ENST00000401394 KIR2DS4P43632 304 aa17.74■□□□□ 0.43
CTCF-202ENST00000401394 KIR2DS1Q14954 304 aa17.74■□□□□ 0.43
CTCF-202ENST00000401394 LRRC75BQ2VPJ9 315 aa17.74■□□□□ 0.43
CTCF-202ENST00000401394 VAX2Q9UIW0 290 aa17.74■□□□□ 0.43
CTCF-202ENST00000401394 SRD5A2P31213 254 aa17.74■□□□□ 0.43
CTCF-202ENST00000401394 COLCA1Q6ZS62 124 aa17.74■□□□□ 0.43
CTCF-202ENST00000401394 DERL1Q9BUN8 251 aa17.74■□□□□ 0.43
CTCF-202ENST00000401394 PHF7Q9BWX1 381 aaPredicted RBP17.74■□□□□ 0.43
CTCF-202ENST00000401394 PARLQ9H300 379 aa17.74■□□□□ 0.43
CTCF-202ENST00000401394 TCFL5Q9UL49 500 aa17.74■□□□□ 0.43
CTCF-202ENST00000401394 GALR1P47211 349 aa17.73■□□□□ 0.43
CTCF-202ENST00000401394 ABLIM2Q6H8Q1 611 aa17.73■□□□□ 0.43
CTCF-202ENST00000401394 BTNL3Q6UXE8 466 aa17.73■□□□□ 0.43
CTCF-202ENST00000401394 OR1P1Q8NH06 330 aa17.73■□□□□ 0.43
CTCF-202ENST00000401394 TRAV1-1A0A0B4J248 108 aa17.73■□□□□ 0.43
CTCF-202ENST00000401394 K7ESF4 209 aa17.73■□□□□ 0.43
CTCF-202ENST00000401394 NUPR1O60356 82 aa17.73■□□□□ 0.43
CTCF-202ENST00000401394 UBE2G2P60604 165 aa17.73■□□□□ 0.43
CTCF-202ENST00000401394 OR8G1Q15617 311 aa17.73■□□□□ 0.43
CTCF-202ENST00000401394 ALKBH6Q3KRA9 238 aa17.73■□□□□ 0.43
CTCF-202ENST00000401394 CXorf67Q86X51 503 aaPredicted RBP17.73■□□□□ 0.43
CTCF-202ENST00000401394 TMEM183AQ8IXX5 376 aa17.73■□□□□ 0.43
CTCF-202ENST00000401394 OR13D1Q8NGV5 346 aa17.73■□□□□ 0.43
CTCF-202ENST00000401394 C12orf49Q9H741 205 aa17.73■□□□□ 0.43
CTCF-202ENST00000401394 TRBV24-1A0A075B6N3 115 aa17.73■□□□□ 0.43
CTCF-202ENST00000401394 SLC31A2O15432 143 aa17.73■□□□□ 0.43
CTCF-202ENST00000401394 NPPCP23582 126 aa17.73■□□□□ 0.43
CTCF-202ENST00000401394 IDH3GP51553 393 aaPredicted RBP17.73■□□□□ 0.43
CTCF-202ENST00000401394 PCBD1P61457 104 aa17.73■□□□□ 0.43
CTCF-202ENST00000401394 SLC38A11Q08AI6 406 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms