RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 E9PLN8 166 aa15.86■□□□□ 0.13
USP48-204ENST00000400301 AQP7O14520 342 aa15.86■□□□□ 0.13
USP48-204ENST00000400301 KLF3P57682 345 aaPredicted RBP15.86■□□□□ 0.13
USP48-204ENST00000400301 RBPJQ06330 500 aa15.86■□□□□ 0.13
USP48-204ENST00000400301 TRAT1Q6PIZ9 186 aa15.86■□□□□ 0.13
USP48-204ENST00000400301 GGNQ86UU5 652 aa15.86■□□□□ 0.13
USP48-204ENST00000400301 POM121Q96HA1 1249 aa15.86■□□□□ 0.13
USP48-204ENST00000400301 APC2O95996 2303 aa15.86■□□□□ 0.13
USP48-204ENST00000400301 OR52L2PQ8NGH6 319 aa15.86■□□□□ 0.13
USP48-204ENST00000400301 RARRES2Q99969 163 aa15.86■□□□□ 0.13
USP48-204ENST00000400301 SMDT1Q9H4I9 107 aa15.86■□□□□ 0.13
USP48-204ENST00000400301 CLN8Q9UBY8 286 aa15.86■□□□□ 0.13
USP48-204ENST00000400301 IGKV1-27A0A075B6S5 117 aa15.86■□□□□ 0.13
USP48-204ENST00000400301 IGSF23A1L1A6 192 aa15.86■□□□□ 0.13
USP48-204ENST00000400301 GABRA6Q16445 453 aa15.86■□□□□ 0.13
USP48-204ENST00000400301 ST8SIA5O15466 376 aa15.85■□□□□ 0.13
USP48-204ENST00000400301 KLK10O43240 276 aa15.85■□□□□ 0.13
USP48-204ENST00000400301 SCGB1D1O95968 90 aa15.85■□□□□ 0.13
USP48-204ENST00000400301 CDC34P49427 236 aaPredicted RBP15.85■□□□□ 0.13
USP48-204ENST00000400301 GNG10P50151 68 aa15.85■□□□□ 0.13
USP48-204ENST00000400301 RBMXL3Q8N7X1 1067 aaKnown RBP15.85■□□□□ 0.13
USP48-204ENST00000400301 ZBTB34Q8NCN2 500 aa15.85■□□□□ 0.13
USP48-204ENST00000400301 COMMD5Q9GZQ3 224 aa15.85■□□□□ 0.13
USP48-204ENST00000400301 TRBV6-7A0A0A0MS04 114 aa15.85■□□□□ 0.13
USP48-204ENST00000400301 ETV2O00321 342 aaPredicted RBP15.85■□□□□ 0.13
USP48-204ENST00000400301 RHBDL1O75783 438 aa15.85■□□□□ 0.13
USP48-204ENST00000400301 CSRP2Q16527 193 aa15.85■□□□□ 0.13
USP48-204ENST00000400301 NRN1LQ496H8 165 aa15.85■□□□□ 0.13
USP48-204ENST00000400301 KHDC3LQ587J8 217 aa15.85■□□□□ 0.13
USP48-204ENST00000400301 DHRS7BQ6IAN0 325 aaPredicted RBP15.85■□□□□ 0.13
USP48-204ENST00000400301 OR1L1Q8NH94 360 aa15.85■□□□□ 0.13
USP48-204ENST00000400301 TIMM8BQ9Y5J9 83 aaPredicted RBP15.85■□□□□ 0.13
USP48-204ENST00000400301 ZNF891A8MT65 544 aaPredicted RBP15.85■□□□□ 0.13
USP48-204ENST00000400301 SP9P0CG40 484 aa15.85■□□□□ 0.13
USP48-204ENST00000400301 PNRC1Q12796 327 aaPredicted RBP15.85■□□□□ 0.13
USP48-204ENST00000400301 BHLHA15Q7RTS1 189 aaPredicted RBP15.85■□□□□ 0.13
USP48-204ENST00000400301 OR10D4PQ8NGN7 298 aa15.85■□□□□ 0.13
USP48-204ENST00000400301 VAX2Q9UIW0 290 aa15.85■□□□□ 0.13
USP48-204ENST00000400301 OR7C2O60412 319 aa15.85■□□□□ 0.13
USP48-204ENST00000400301 MGST1P10620 155 aaKnown RBP15.85■□□□□ 0.13
USP48-204ENST00000400301 CORO2AQ92828 525 aa15.85■□□□□ 0.13
USP48-204ENST00000400301 TMPRSS5Q9H3S3 457 aa15.85■□□□□ 0.13
USP48-204ENST00000400301 F6UZH7 168 aa15.84■□□□□ 0.13
USP48-204ENST00000400301 HBZP02008 142 aa15.84■□□□□ 0.13
USP48-204ENST00000400301 WBP1Q96G27 269 aa15.84■□□□□ 0.13
USP48-204ENST00000400301 RPH3ALQ9UNE2 315 aa15.84■□□□□ 0.13
USP48-204ENST00000400301 AUP1Q9Y679 476 aa15.84■□□□□ 0.13
USP48-204ENST00000400301 MKRN2OSH3BPM6 223 aa15.84■□□□□ 0.13
USP48-204ENST00000400301 LHX2P50458 406 aa15.84■□□□□ 0.13
USP48-204ENST00000400301 FOXG1P55316 489 aaPredicted RBP15.84■□□□□ 0.13
USP48-204ENST00000400301 BTNL8Q6UX41 500 aa15.84■□□□□ 0.13
USP48-204ENST00000400301 ZNF665Q9H7R5 613 aa15.84■□□□□ 0.13
USP48-204ENST00000400301 CYTL1Q9NRR1 136 aa15.84■□□□□ 0.13
USP48-204ENST00000400301 PLSCR2Q9NRY7 297 aa15.84■□□□□ 0.13
USP48-204ENST00000400301 GZMHP20718 246 aa15.84■□□□□ 0.13
USP48-204ENST00000400301 MRGPRGQ86SM5 289 aa15.84■□□□□ 0.13
USP48-204ENST00000400301 MOGAT3Q86VF5 341 aa15.84■□□□□ 0.13
USP48-204ENST00000400301 FGFRL1Q8N441 504 aa15.84■□□□□ 0.13
USP48-204ENST00000400301 BMPERQ8N8U9 685 aa15.84■□□□□ 0.13
USP48-204ENST00000400301 OR10X1Q8NGY0 326 aa15.84■□□□□ 0.13
USP48-204ENST00000400301 SLC35E1Q96K37 410 aa15.84■□□□□ 0.13
USP48-204ENST00000400301 TMEM68Q96MH6 324 aa15.84■□□□□ 0.13
USP48-204ENST00000400301 GINS3Q9BRX5 216 aa15.84■□□□□ 0.13
USP48-204ENST00000400301 MRPS18CQ9Y3D5 142 aaKnown RBP15.84■□□□□ 0.13
USP48-204ENST00000400301 C9orf172C9J069 976 aa15.83■□□□□ 0.13
USP48-204ENST00000400301 OTX1P32242 354 aaPredicted RBP15.83■□□□□ 0.13
USP48-204ENST00000400301 RND3P61587 244 aa15.83■□□□□ 0.13
USP48-204ENST00000400301 SRSF4Q08170 494 aaKnown RBP15.83■□□□□ 0.13
USP48-204ENST00000400301 H1FOOQ8IZA3 346 aaPredicted RBP15.83■□□□□ 0.13
USP48-204ENST00000400301 SSUH2Q9Y2M2 353 aa15.83■□□□□ 0.13
USP48-204ENST00000400301 TTC28Q96AY4 2481 aa15.83■□□□□ 0.12
USP48-204ENST00000400301 PQLC2LA1A4F0 135 aa15.83■□□□□ 0.12
USP48-204ENST00000400301 DBX1A6NMT0 343 aa15.83■□□□□ 0.12
USP48-204ENST00000400301 GALR2O43603 387 aaPredicted RBP15.83■□□□□ 0.12
USP48-204ENST00000400301 CLDN18P56856 261 aa15.83■□□□□ 0.12
USP48-204ENST00000400301 BSXQ3C1V8 233 aa15.83■□□□□ 0.12
USP48-204ENST00000400301 WDR87Q6ZQQ6 2873 aa15.83■□□□□ 0.12
USP48-204ENST00000400301 ZNF320A2RRD8 509 aa15.83■□□□□ 0.12
USP48-204ENST00000400301 H0YL77 283 aa15.83■□□□□ 0.12
USP48-204ENST00000400301 CRYABP02511 175 aaKnown RBP15.83■□□□□ 0.12
USP48-204ENST00000400301 UCP1P25874 307 aa15.83■□□□□ 0.12
USP48-204ENST00000400301 ZNF90Q03938 601 aa15.83■□□□□ 0.12
USP48-204ENST00000400301 TMEM37Q8WXS4 190 aa15.83■□□□□ 0.12
USP48-204ENST00000400301 OR6C3Q9NZP0 311 aa15.83■□□□□ 0.12
USP48-204ENST00000400301 ZNF581Q9P0T4 197 aa15.83■□□□□ 0.12
USP48-204ENST00000400301 EIF3GO75821 320 aaKnown RBP eCLIP15.82■□□□□ 0.12
USP48-204ENST00000400301 COL10A1Q03692 680 aa15.82■□□□□ 0.12
USP48-204ENST00000400301 ZNF66Q6ZN08 573 aa15.82■□□□□ 0.12
USP48-204ENST00000400301 IL22RA2Q969J5 263 aa15.82■□□□□ 0.12
USP48-204ENST00000400301 TNFAIP6P98066 277 aaPredicted RBP15.82■□□□□ 0.12
USP48-204ENST00000400301 LOXL4Q96JB6 756 aa15.82■□□□□ 0.12
USP48-204ENST00000400301 C1orf147Q96MC9 270 aaPredicted RBP15.82■□□□□ 0.12
USP48-204ENST00000400301 FAM117AQ9C073 453 aa15.82■□□□□ 0.12
USP48-204ENST00000400301 KIAA2026Q5HYC2 2103 aa15.82■□□□□ 0.12
USP48-204ENST00000400301 CSRP1P21291 193 aaKnown RBP15.82■□□□□ 0.12
USP48-204ENST00000400301 BAGE3Q86Y29 109 aa15.82■□□□□ 0.12
USP48-204ENST00000400301 BAGE2Q86Y30 109 aa15.82■□□□□ 0.12
USP48-204ENST00000400301 NEIL1Q96FI4 390 aaPredicted RBP15.82■□□□□ 0.12
USP48-204ENST00000400301 TREM2Q9NZC2 230 aa15.82■□□□□ 0.12
USP48-204ENST00000400301 IGKV1D-13A0A0B4J2D9 117 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 492.1 ms