RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 GPA33Q99795 319 aa6.26□□□□□ -1.41
UPF2-203ENST00000397053 IL17BQ9UHF5 180 aa6.26□□□□□ -1.41
UPF2-203ENST00000397053 PRSS50Q9UI38 385 aa6.26□□□□□ -1.41
UPF2-203ENST00000397053 LOC389332A0A1B0GUA5 103 aa6.26□□□□□ -1.41
UPF2-203ENST00000397053 CXorf1O96002 111 aa6.26□□□□□ -1.41
UPF2-203ENST00000397053 SUCLG1P53597 346 aaKnown RBP6.26□□□□□ -1.41
UPF2-203ENST00000397053 MFAP2P55001 183 aa6.26□□□□□ -1.41
UPF2-203ENST00000397053 ZNF56Q15929 161 aa6.26□□□□□ -1.41
UPF2-203ENST00000397053 PIGYQ3MUY2 71 aa6.26□□□□□ -1.41
UPF2-203ENST00000397053 FAM209AQ5JX71 171 aa6.26□□□□□ -1.41
UPF2-203ENST00000397053 FAM24BQ8N5W8 94 aa6.26□□□□□ -1.41
UPF2-203ENST00000397053 ITLN2Q8WWU7 325 aaPredicted RBP6.26□□□□□ -1.41
UPF2-203ENST00000397053 A0A1W2PPC1 479 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 A6NDN8 102 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 SPINT1O43278 529 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 PLAUP00749 431 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 FUCA1P04066 466 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 EMP1P54849 157 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 PAPPA-AS1Q5QFB9 102 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 MRM1Q6IN84 353 aaKnown RBP6.25□□□□□ -1.41
UPF2-203ENST00000397053 COPS9Q8WXC6 57 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 NPVFQ9HCQ7 196 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 MRM2Q9UI43 246 aaKnown RBP6.25□□□□□ -1.41
UPF2-203ENST00000397053 NALCNQ8IZF0 1738 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 RBFOX3A6NFN3 312 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 C5orf67F2Z3F1 127 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 DNAL4O96015 105 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 HBZP02008 142 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 VSIG10L2P0DP72 767 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 COMPP49747 757 aaPredicted RBP6.25□□□□□ -1.41
UPF2-203ENST00000397053 RND2P52198 227 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 STARD6P59095 220 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 ARFGEF3Q5TH69 2177 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 FAM159AQ6UWV7 190 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 LINC00596Q86U02 117 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 SFXN3Q9BWM7 321 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 TLNRD1Q9H1K6 362 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 RCC2Q9P258 522 aaKnown RBP6.25□□□□□ -1.41
UPF2-203ENST00000397053 MYH15Q9Y2K3 1946 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 TRAV30A0A087WSZ9 112 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 IGHV1-69-2A0A0G2JMI3 117 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 A0A1W2PRX2 142 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 IFITM10A6NMD0 228 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 B9A039 149 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 CDS2O95674 445 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 HOXB1P14653 301 aaPredicted RBP6.25□□□□□ -1.41
UPF2-203ENST00000397053 CKS2P33552 79 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 SSTR5P35346 364 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 MESTQ5EB52 335 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 WDR34Q96EX3 536 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 MMP26Q9NRE1 261 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 SOX21Q9Y651 276 aaPredicted RBP6.25□□□□□ -1.41
UPF2-203ENST00000397053 MYH8P13535 1937 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 MYO18BQ8IUG5 2567 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 NUDT3O95989 172 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 MBPP02686 304 aaPredicted RBP6.25□□□□□ -1.41
UPF2-203ENST00000397053 P2RY1P47900 373 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 NMUP48645 174 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 CX3CL1P78423 397 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 RELQ04864 619 aaPredicted RBP6.25□□□□□ -1.41
UPF2-203ENST00000397053 ZIC1Q15915 447 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 UQCC3Q6UW78 93 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 Q6ZNX1 250 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 RIMKLAQ8IXN7 391 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 ABHD12Q8N2K0 398 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 ADAD2Q8NCV1 583 aaKnown RBP6.25□□□□□ -1.41
UPF2-203ENST00000397053 OR1K1Q8NGR3 316 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 OR9G1Q8NH87 305 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 FAM168AQ92567 244 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 ZNF501Q96CX3 271 aaPredicted RBP6.25□□□□□ -1.41
UPF2-203ENST00000397053 ALG14Q96F25 216 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 CHST5Q9GZS9 411 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 C7orf69Q9H7B7 122 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 VAX2Q9UIW0 290 aa6.25□□□□□ -1.41
UPF2-203ENST00000397053 LOC107984156A0A0G2JMH3 177 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 TCRBV5S2A0A599 114 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 FBLL1A6NHQ2 334 aaKnown RBP6.24□□□□□ -1.41
UPF2-203ENST00000397053 C17orf51A8MQB3 221 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 SNURFLB1AK76 121 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 C9JCJ5 164 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 RPL36A-HNRNPH2H7BZ11 118 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 CDC42EP2O14613 210 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 RBFOX2O43251 390 aaKnown RBP eCLIP6.24□□□□□ -1.41
UPF2-203ENST00000397053 CEACAM4O75871 244 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 TRGV3P03979 118 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 RAE1P78406 368 aaKnown RBP6.24□□□□□ -1.41
UPF2-203ENST00000397053 HIST1H1AQ02539 215 aaPredicted RBP6.24□□□□□ -1.41
UPF2-203ENST00000397053 FAM27BQ5VT28 67 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 ARL17AQ8IVW1 177 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 PNKDQ8N490 385 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 C17orf47Q8NEP4 570 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 EEF1AKMT3Q96AZ1 226 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 PHYHIPLQ96FC7 376 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 MS4A3Q96HJ5 214 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 NEURL2Q9BR09 285 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 CLEC7AQ9BXN2 247 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 TCHHQ07283 1943 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 PTP4A3O75365 173 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 ALX3O95076 343 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 IER3P46695 156 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms