RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 DIRC2Q96SL1 478 aa4.93□□□□□ -1.62
RFFL-202ENST00000394597 PLEKHA3Q9HB20 300 aa4.93□□□□□ -1.62
RFFL-202ENST00000394597 GPR35Q9HC97 309 aa4.93□□□□□ -1.62
RFFL-202ENST00000394597 INTS1Q8N201 2190 aaKnown RBP4.93□□□□□ -1.62
RFFL-202ENST00000394597 CACNA1BQ00975 2339 aa4.93□□□□□ -1.62
RFFL-202ENST00000394597 IGLV3-32A0A0A0MS00 114 aa4.93□□□□□ -1.62
RFFL-202ENST00000394597 H0YIZ8 118 aa4.93□□□□□ -1.62
RFFL-202ENST00000394597 GFRA3O60609 400 aa4.93□□□□□ -1.62
RFFL-202ENST00000394597 DEDDO75618 318 aa4.93□□□□□ -1.62
RFFL-202ENST00000394597 HIST1H1DP16402 221 aaKnown RBP4.93□□□□□ -1.62
RFFL-202ENST00000394597 WNT5AP41221 380 aa4.93□□□□□ -1.62
RFFL-202ENST00000394597 PLA2G2CQ5R387 149 aa4.93□□□□□ -1.62
RFFL-202ENST00000394597 SLC25A47Q6Q0C1 308 aa4.93□□□□□ -1.62
RFFL-202ENST00000394597 NUFIP2Q7Z417 695 aaKnown RBP4.93□□□□□ -1.62
RFFL-202ENST00000394597 GCNT2Q8N0V5 402 aa4.93□□□□□ -1.62
RFFL-202ENST00000394597 ZNF808Q8N4W9 903 aaPredicted RBP4.93□□□□□ -1.62
RFFL-202ENST00000394597 BHLHE23Q8NDY6 225 aa4.93□□□□□ -1.62
RFFL-202ENST00000394597 ANAPC16Q96DE5 110 aa4.93□□□□□ -1.62
RFFL-202ENST00000394597 B3GAT1Q9P2W7 334 aa4.93□□□□□ -1.62
RFFL-202ENST00000394597 NAT8BQ9UHF3 227 aa4.93□□□□□ -1.62
RFFL-202ENST00000394597 DUSP13Q9UII6 198 aa4.93□□□□□ -1.62
RFFL-202ENST00000394597 KLHDC2Q9Y2U9 406 aa4.93□□□□□ -1.62
RFFL-202ENST00000394597 OR7C2O60412 319 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 ZIC3O60481 467 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 WDR1O75083 606 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 CLDN1O95832 211 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 HRASP01112 189 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 PATE4P0C8F1 98 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 TDGF1P13385 188 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 FAHP16930 419 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 UCP3P55916 312 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 EWSR1Q01844 656 aaKnown RBP eCLIP4.92□□□□□ -1.62
RFFL-202ENST00000394597 ANKRD55Q3KP44 614 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 C1orf194Q5T5A4 169 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 LINC01590Q5TEZ4 76 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 MYPOPQ86VE0 399 aaPredicted RBP4.92□□□□□ -1.62
RFFL-202ENST00000394597 LRRC75AQ8NAA5 344 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 ZCCHC14Q8WYQ9 949 aaKnown RBP4.92□□□□□ -1.62
RFFL-202ENST00000394597 KISS1RQ969F8 398 aaPredicted RBP4.92□□□□□ -1.62
RFFL-202ENST00000394597 ERGIC1Q969X5 290 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 HES7Q9BYE0 225 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 CLCF1Q9UBD9 225 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 PPIHO43447 177 aaKnown RBP4.92□□□□□ -1.62
RFFL-202ENST00000394597 SPINK4O60575 86 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 DHRS3O75911 302 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 SRP19P09132 144 aaKnown RBP4.92□□□□□ -1.62
RFFL-202ENST00000394597 ZNF708P17019 499 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 MPZP25189 248 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 DYNLT3P51808 116 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 FUT6P51993 359 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 ZNF133P52736 654 aaPredicted RBP4.92□□□□□ -1.62
RFFL-202ENST00000394597 RUNX1Q01196 453 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 GAGE1Q13065 139 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 ZNF154Q13106 437 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 MMDQ15546 238 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 PLAC9Q5JTB6 97 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 FAM27BQ5VT28 67 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 ERASQ7Z444 233 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 HOGA1Q86XE5 327 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 ZNF331Q9NQX6 463 aaPredicted RBP4.92□□□□□ -1.62
RFFL-202ENST00000394597 CYTL1Q9NRR1 136 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 TMEM38BQ9NVV0 291 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 GPR132Q9UNW8 380 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 ZNF253O75346 499 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 UPK3AO75631 287 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 CRYAAP02489 173 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 RFPL3SP0C7P2 107 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 BCL2P10415 239 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 BMI1P35226 326 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 ROM1Q03395 351 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 MST1LQ2TV78 715 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 FBLN7Q53RD9 439 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 SPANXN5Q5MJ07 72 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 TSPO2Q5TGU0 170 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 NIT1Q86X76 327 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 OR5AS1Q8N127 324 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 ZNF611Q8N823 705 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 ST6GALNAC3Q8NDV1 305 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 OR8B12Q8NGG6 310 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 MOB3AQ96BX8 217 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 SIGLEC12Q96PQ1 595 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 LRFN3Q9BTN0 628 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 RTL8AQ9BWD3 113 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 ZNF71Q9NQZ8 489 aaPredicted RBP4.92□□□□□ -1.62
RFFL-202ENST00000394597 FOXD3Q9UJU5 478 aaPredicted RBP4.92□□□□□ -1.62
RFFL-202ENST00000394597 LAMTOR2Q9Y2Q5 125 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 MRPS18CQ9Y3D5 142 aaKnown RBP4.92□□□□□ -1.62
RFFL-202ENST00000394597 BDP1A6H8Y1 2624 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 GAGE10A6NGK3 116 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 NPIPB7O75200 414 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 KRASP01116 189 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 HLA-GP17693 338 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 RIPPLY3P57055 190 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 RPS11P62280 158 aaKnown RBP eCLIP4.92□□□□□ -1.62
RFFL-202ENST00000394597 PDLIM3Q53GG5 364 aaPredicted RBP4.92□□□□□ -1.62
RFFL-202ENST00000394597 SLC25A26Q70HW3 274 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 LYZL2Q7Z4W2 148 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 C20orf196Q8IYI0 205 aa4.92□□□□□ -1.62
RFFL-202ENST00000394597 CISD2Q8N5K1 135 aaKnown RBP4.92□□□□□ -1.62
RFFL-202ENST00000394597 SVIPQ8NHG7 77 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms