RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 MAS1LP35410 378 aa11.91□□□□□ -0.5
COL4A1-201ENST00000375820 LRRC75BQ2VPJ9 315 aa11.91□□□□□ -0.5
COL4A1-201ENST00000375820 FBXW9Q5XUX1 488 aa11.91□□□□□ -0.5
COL4A1-201ENST00000375820 PXMP4Q9Y6I8 212 aa11.91□□□□□ -0.5
COL4A1-201ENST00000375820 ELOA3CA0A087WX78 387 aaPredicted RBP11.91□□□□□ -0.5
COL4A1-201ENST00000375820 SMAD7O15105 426 aaKnown RBP11.91□□□□□ -0.5
COL4A1-201ENST00000375820 NDUFB4O95168 129 aa11.91□□□□□ -0.5
COL4A1-201ENST00000375820 HSPB1P04792 205 aaKnown RBP11.91□□□□□ -0.5
COL4A1-201ENST00000375820 SCTP09683 121 aa11.91□□□□□ -0.5
COL4A1-201ENST00000375820 KLK2P20151 261 aa11.91□□□□□ -0.5
COL4A1-201ENST00000375820 CYB561D1Q8N8Q1 229 aa11.91□□□□□ -0.5
COL4A1-201ENST00000375820 IGHV3-23P01764 117 aa11.91□□□□□ -0.5
COL4A1-201ENST00000375820 WDFY1Q8IWB7 410 aa11.91□□□□□ -0.5
COL4A1-201ENST00000375820 OR5AC2Q9NZP5 309 aa11.91□□□□□ -0.5
COL4A1-201ENST00000375820 FAM74A4Q5TZK3 123 aa11.91□□□□□ -0.5
COL4A1-201ENST00000375820 DMRTA2Q96SC8 542 aa11.91□□□□□ -0.5
COL4A1-201ENST00000375820 MS4A5Q9H3V2 200 aa11.91□□□□□ -0.5
COL4A1-201ENST00000375820 WDR25Q64LD2 544 aaPredicted RBP11.9□□□□□ -0.5
COL4A1-201ENST00000375820 ATG101Q9BSB4 218 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 SLC25A33Q9BSK2 321 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 ZDHHC8Q9ULC8 765 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 A0A1W2PPV9 198 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 K7N7A8 449 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 PRSS23O95084 383 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 NANOS3P60323 173 aaKnown RBP11.9□□□□□ -0.5
COL4A1-201ENST00000375820 GCSAMLQ5JQS6 135 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 PMS2CLQ68D20 193 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 OR10J6PQ8NGY7 276 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 WBP1LQ9NX94 342 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 MYO5AQ9Y4I1 1855 aaKnown RBP11.9□□□□□ -0.5
COL4A1-201ENST00000375820 OR4C45A6NMZ5 311 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 NKX2-8O15522 239 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 C1QL1O75973 258 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 CD160O95971 181 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 HBZP02008 142 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 PGA4P0DJD7 388 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 PGA5P0DJD9 388 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 VKORC1L1Q8N0U8 176 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 SGMS2Q8NHU3 365 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 OPN4Q9UHM6 478 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 SCN9AQ15858 1988 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 HYPMO75409 117 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 FCGR2BP31994 310 aaPredicted RBP11.9□□□□□ -0.5
COL4A1-201ENST00000375820 FAM53AQ6NSI3 398 aaPredicted RBP11.9□□□□□ -0.5
COL4A1-201ENST00000375820 ZNF721Q8TF20 911 aa11.9□□□□□ -0.5
COL4A1-201ENST00000375820 BEX4Q9NWD9 120 aaPredicted RBP11.9□□□□□ -0.5
COL4A1-201ENST00000375820 NUP214P35658 2090 aaPredicted RBP11.9□□□□□ -0.51
COL4A1-201ENST00000375820 IGHV3-66A0A0C4DH42 116 aa11.9□□□□□ -0.51
COL4A1-201ENST00000375820 SS18L1O75177 396 aaPredicted RBP11.9□□□□□ -0.51
COL4A1-201ENST00000375820 CD99P14209 185 aa11.9□□□□□ -0.51
COL4A1-201ENST00000375820 C1orf185Q5T7R7 199 aa11.9□□□□□ -0.51
COL4A1-201ENST00000375820 DCAF12L2Q5VW00 463 aa11.9□□□□□ -0.51
COL4A1-201ENST00000375820 SIRT7Q9NRC8 400 aa11.9□□□□□ -0.51
COL4A1-201ENST00000375820 A0A1W2PQD3 144 aa11.89□□□□□ -0.51
COL4A1-201ENST00000375820 RBM11P57052 281 aaKnown RBP11.89□□□□□ -0.51
COL4A1-201ENST00000375820 ATP1A1-AS1Q5TC04 95 aa11.89□□□□□ -0.51
COL4A1-201ENST00000375820 C19orf48Q6RUI8 117 aa11.89□□□□□ -0.51
COL4A1-201ENST00000375820 MRGPRGQ86SM5 289 aa11.89□□□□□ -0.51
COL4A1-201ENST00000375820 ITLN1Q8WWA0 313 aa11.89□□□□□ -0.51
COL4A1-201ENST00000375820 IGHV3OR16-13A0A075B7E8 117 aa11.89□□□□□ -0.51
COL4A1-201ENST00000375820 IGHV3-74A0A0B4J1X5 117 aa11.89□□□□□ -0.51
COL4A1-201ENST00000375820 NUDT3O95989 172 aa11.89□□□□□ -0.51
COL4A1-201ENST00000375820 NAT1P18440 290 aa11.89□□□□□ -0.51
COL4A1-201ENST00000375820 IZUMO4Q1ZYL8 232 aa11.89□□□□□ -0.51
COL4A1-201ENST00000375820 TMEM78Q5T7P6 136 aa11.89□□□□□ -0.51
COL4A1-201ENST00000375820 HSPB9Q9BQS6 159 aa11.89□□□□□ -0.51
COL4A1-201ENST00000375820 ZNF256Q9Y2P7 627 aaPredicted RBP11.89□□□□□ -0.51
COL4A1-201ENST00000375820 FCGR3AP08637 254 aa11.89□□□□□ -0.51
COL4A1-201ENST00000375820 PSG4Q00888 419 aa11.89□□□□□ -0.51
COL4A1-201ENST00000375820 OR4A5Q8NH83 315 aa11.89□□□□□ -0.51
COL4A1-201ENST00000375820 A0A1B0GU03 582 aa11.89□□□□□ -0.51
COL4A1-201ENST00000375820 GMPPAQ96IJ6 420 aaPredicted RBP11.89□□□□□ -0.51
COL4A1-201ENST00000375820 PRSS27Q9BQR3 290 aa11.89□□□□□ -0.51
COL4A1-201ENST00000375820 ZFP30Q9Y2G7 519 aa11.89□□□□□ -0.51
COL4A1-201ENST00000375820 HOXC4P09017 264 aaPredicted RBP11.89□□□□□ -0.51
COL4A1-201ENST00000375820 CHST5Q9GZS9 411 aa11.89□□□□□ -0.51
COL4A1-201ENST00000375820 TLNRD1Q9H1K6 362 aa11.89□□□□□ -0.51
COL4A1-201ENST00000375820 SIRT4Q9Y6E7 314 aaPredicted RBP11.89□□□□□ -0.51
COL4A1-201ENST00000375820 KBTBD11O94819 623 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 SCAND1P57086 179 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 CLEC2AQ6UVW9 174 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 ATOH7Q8N100 152 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 RHOVQ96L33 236 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 S4R3C0 116 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 LDLRAD4O15165 306 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 CTDSPLO15194 276 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 CKS2P33552 79 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 SPATA45Q537H7 98 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 TMEM91Q6ZNR0 172 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 RAXQ9Y2V3 346 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 KNTC1P50748 2209 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 DOCK2Q92608 1830 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 CTXND1A0A1B0GTU2 59 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 RAG2P55895 527 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 C2orf83Q53S99 150 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 UNQ5815/PRO19632Q6UWF5 114 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 FOXC2Q99958 501 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 A0A0J9YW62 118 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 B4DEV8 164 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 RSPO4Q2I0M5 234 aaPredicted RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms