RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 OR2W3Q7Z3T1 314 aa17.09■□□□□ 0.33
CCDC28B-201ENST00000373602 FAM71E2Q8N5Q1 922 aa17.09■□□□□ 0.33
CCDC28B-201ENST00000373602 LINC00482Q8N8I6 264 aa17.09■□□□□ 0.33
CCDC28B-201ENST00000373602 OR51D1Q8NGF3 324 aa17.09■□□□□ 0.33
CCDC28B-201ENST00000373602 RBMXL1Q96E39 390 aaKnown RBP17.09■□□□□ 0.33
CCDC28B-201ENST00000373602 RCC1LQ96I51 464 aaKnown RBP17.09■□□□□ 0.33
CCDC28B-201ENST00000373602 RASL11BQ9BPW5 248 aa17.09■□□□□ 0.33
CCDC28B-201ENST00000373602 CCDC90BQ9GZT6 254 aa17.09■□□□□ 0.33
CCDC28B-201ENST00000373602 LPAR5Q9H1C0 372 aa17.09■□□□□ 0.33
CCDC28B-201ENST00000373602 AURKAIP1Q9NWT8 199 aaPredicted RBP17.09■□□□□ 0.33
CCDC28B-201ENST00000373602 SLC17A2O00624 439 aa17.08■□□□□ 0.32
CCDC28B-201ENST00000373602 ARL6IP5O75915 188 aa17.08■□□□□ 0.32
CCDC28B-201ENST00000373602 SLC6A1P30531 599 aa17.08■□□□□ 0.32
CCDC28B-201ENST00000373602 SVOPQ8N4V2 548 aa17.08■□□□□ 0.32
CCDC28B-201ENST00000373602 MGLLQ99685 303 aa17.08■□□□□ 0.32
CCDC28B-201ENST00000373602 GON7Q9BXV9 100 aa17.08■□□□□ 0.32
CCDC28B-201ENST00000373602 PLGRKTQ9HBL7 147 aa17.08■□□□□ 0.32
CCDC28B-201ENST00000373602 PLEKHJ1Q9NW61 149 aa17.08■□□□□ 0.32
CCDC28B-201ENST00000373602 ABRACLQ9P1F3 81 aa17.08■□□□□ 0.32
CCDC28B-201ENST00000373602 AK6Q9Y3D8 172 aaKnown RBP17.08■□□□□ 0.32
CCDC28B-201ENST00000373602 DUS4LO95620 317 aaKnown RBP17.07■□□□□ 0.32
CCDC28B-201ENST00000373602 ARSBP15848 533 aa17.07■□□□□ 0.32
CCDC28B-201ENST00000373602 MAP2K4P45985 399 aa17.07■□□□□ 0.32
CCDC28B-201ENST00000373602 THBS3P49746 956 aa17.07■□□□□ 0.32
CCDC28B-201ENST00000373602 P2RY14Q15391 338 aa17.07■□□□□ 0.32
CCDC28B-201ENST00000373602 PNLIPRP3Q17RR3 467 aa17.07■□□□□ 0.32
CCDC28B-201ENST00000373602 TEX38Q6PEX7 206 aa17.07■□□□□ 0.32
CCDC28B-201ENST00000373602 IZUMO2Q6UXV1 221 aa17.07■□□□□ 0.32
CCDC28B-201ENST00000373602 C18orf65Q6ZTR6 163 aa17.07■□□□□ 0.32
CCDC28B-201ENST00000373602 MRPL41Q8IXM3 137 aaKnown RBP17.07■□□□□ 0.32
CCDC28B-201ENST00000373602 FAM89BQ8N5H3 189 aa17.07■□□□□ 0.32
CCDC28B-201ENST00000373602 MRAPQ8TCY5 172 aa17.07■□□□□ 0.32
CCDC28B-201ENST00000373602 URM1Q9BTM9 101 aaKnown RBP17.07■□□□□ 0.32
CCDC28B-201ENST00000373602 TRBV6-6A0A0A6YYG2 114 aa17.06■□□□□ 0.32
CCDC28B-201ENST00000373602 SOX6P35712 828 aa17.06■□□□□ 0.32
CCDC28B-201ENST00000373602 HSPA13P48723 471 aa17.06■□□□□ 0.32
CCDC28B-201ENST00000373602 ZNF833PQ6ZTB9 187 aa17.06■□□□□ 0.32
CCDC28B-201ENST00000373602 C8orf86Q6ZUL3 223 aa17.06■□□□□ 0.32
CCDC28B-201ENST00000373602 MOB1BQ7L9L4 216 aa17.06■□□□□ 0.32
CCDC28B-201ENST00000373602 OR2AK2Q8NG84 335 aa17.06■□□□□ 0.32
CCDC28B-201ENST00000373602 NABP2Q9BQ15 211 aa17.06■□□□□ 0.32
CCDC28B-201ENST00000373602 HSPB9Q9BQS6 159 aa17.06■□□□□ 0.32
CCDC28B-201ENST00000373602 MRPL20Q9BYC9 149 aaKnown RBP17.06■□□□□ 0.32
CCDC28B-201ENST00000373602 RIMS4Q9H426 269 aaPredicted RBP17.06■□□□□ 0.32
CCDC28B-201ENST00000373602 CHMP1AQ9HD42 196 aaPredicted RBP17.06■□□□□ 0.32
CCDC28B-201ENST00000373602 FOXI3A8MTJ6 420 aaPredicted RBP17.05■□□□□ 0.32
CCDC28B-201ENST00000373602 NUDT19A8MXV4 375 aa17.05■□□□□ 0.32
CCDC28B-201ENST00000373602 SOCS1O15524 211 aa17.05■□□□□ 0.32
CCDC28B-201ENST00000373602 RRP9O43818 475 aaKnown RBP17.05■□□□□ 0.32
CCDC28B-201ENST00000373602 OR3A3P47888 321 aa17.05■□□□□ 0.32
CCDC28B-201ENST00000373602 FABP5Q01469 135 aa17.05■□□□□ 0.32
CCDC28B-201ENST00000373602 RAB11BQ15907 218 aa17.05■□□□□ 0.32
CCDC28B-201ENST00000373602 KLHL30-AS1Q8NEE0 82 aa17.05■□□□□ 0.32
CCDC28B-201ENST00000373602 IL1F10Q8WWZ1 152 aa17.05■□□□□ 0.32
CCDC28B-201ENST00000373602 IFI27L2Q9H2X8 130 aa17.05■□□□□ 0.32
CCDC28B-201ENST00000373602 STEAP1Q9UHE8 339 aa17.05■□□□□ 0.32
CCDC28B-201ENST00000373602 ZNF580Q9UK33 172 aa17.05■□□□□ 0.32
CCDC28B-201ENST00000373602 HSF4Q9ULV5 492 aa17.05■□□□□ 0.32
CCDC28B-201ENST00000373602 SAA2-SAA4A0A096LPE2 208 aa17.04■□□□□ 0.32
CCDC28B-201ENST00000373602 SAA2P0DJI9 122 aaPredicted RBP17.04■□□□□ 0.32
CCDC28B-201ENST00000373602 CALRP27797 417 aaKnown RBP17.04■□□□□ 0.32
CCDC28B-201ENST00000373602 MYCNOSP40205 109 aa17.04■□□□□ 0.32
CCDC28B-201ENST00000373602 CFHR3Q02985 330 aa17.04■□□□□ 0.32
CCDC28B-201ENST00000373602 MMDQ15546 238 aa17.04■□□□□ 0.32
CCDC28B-201ENST00000373602 TBCEQ15813 527 aaPredicted RBP17.04■□□□□ 0.32
CCDC28B-201ENST00000373602 ZNF695Q8IW36 515 aa17.04■□□□□ 0.32
CCDC28B-201ENST00000373602 RNF152Q8N8N0 203 aa17.04■□□□□ 0.32
CCDC28B-201ENST00000373602 SETD6Q8TBK2 473 aa17.04■□□□□ 0.32
CCDC28B-201ENST00000373602 CNBD2Q96M20 576 aa17.04■□□□□ 0.32
CCDC28B-201ENST00000373602 P2RX4Q99571 388 aa17.04■□□□□ 0.32
CCDC28B-201ENST00000373602 ACOT13Q9NPJ3 140 aa17.04■□□□□ 0.32
CCDC28B-201ENST00000373602 AK3Q9UIJ7 227 aa17.04■□□□□ 0.32
CCDC28B-201ENST00000373602 IGF1P05019 195 aa17.03■□□□□ 0.32
CCDC28B-201ENST00000373602 RPLP1P05386 114 aaKnown RBP17.03■□□□□ 0.32
CCDC28B-201ENST00000373602 ELANEP08246 267 aa17.03■□□□□ 0.32
CCDC28B-201ENST00000373602 TMEM50BP56557 158 aa17.03■□□□□ 0.32
CCDC28B-201ENST00000373602 ACTBP60709 375 aa17.03■□□□□ 0.32
CCDC28B-201ENST00000373602 FOXE3Q13461 319 aa17.03■□□□□ 0.32
CCDC28B-201ENST00000373602 CXorf66Q5JRM2 361 aaPredicted RBP17.03■□□□□ 0.32
CCDC28B-201ENST00000373602 FAM71F2Q6NXP2 309 aa17.03■□□□□ 0.32
CCDC28B-201ENST00000373602 RITA1Q96K30 269 aa17.03■□□□□ 0.32
CCDC28B-201ENST00000373602 BLOC1S6Q9UL45 172 aa17.03■□□□□ 0.32
CCDC28B-201ENST00000373602 DNAH3Q8TD57 4116 aa17.02■□□□□ 0.32
CCDC28B-201ENST00000373602 ST8SIA5O15466 376 aa17.02■□□□□ 0.32
CCDC28B-201ENST00000373602 VDAC1P21796 283 aa17.02■□□□□ 0.32
CCDC28B-201ENST00000373602 RANBP1P43487 201 aa17.02■□□□□ 0.32
CCDC28B-201ENST00000373602 PSMD7P51665 324 aa17.02■□□□□ 0.32
CCDC28B-201ENST00000373602 CLDN12P56749 244 aa17.02■□□□□ 0.32
CCDC28B-201ENST00000373602 ZNF367Q7RTV3 350 aa17.02■□□□□ 0.32
CCDC28B-201ENST00000373602 FAM3DQ96BQ1 224 aa17.02■□□□□ 0.32
CCDC28B-201ENST00000373602 ZNF251Q9BRH9 671 aa17.02■□□□□ 0.32
CCDC28B-201ENST00000373602 HDHD3Q9BSH5 251 aaPredicted RBP17.02■□□□□ 0.32
CCDC28B-201ENST00000373602 PIPOXQ9P0Z9 390 aa17.02■□□□□ 0.32
CCDC28B-201ENST00000373602 SLC23A1Q9UHI7 598 aa17.02■□□□□ 0.32
CCDC28B-201ENST00000373602 ZNF107Q9UII5 783 aaPredicted RBP17.02■□□□□ 0.32
CCDC28B-201ENST00000373602 MGAT4AQ9UM21 535 aa17.02■□□□□ 0.32
CCDC28B-201ENST00000373602 V9GY05 133 aa17.02■□□□□ 0.32
CCDC28B-201ENST00000373602 ERICH4A6NGS2 130 aa17.01■□□□□ 0.31
CCDC28B-201ENST00000373602 ITGB1BP1O14713 200 aa17.01■□□□□ 0.31
CCDC28B-201ENST00000373602 LDLRAD4O15165 306 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms