RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 TRIOBPQ9H2D6 2365 aa13.9□□□□□ -0.18
SDC4-201ENST00000372733 IFNA1P01562 189 aa13.9□□□□□ -0.18
SDC4-201ENST00000372733 AMBPP02760 352 aa13.9□□□□□ -0.18
SDC4-201ENST00000372733 ERVS71-1P61550 626 aa13.9□□□□□ -0.18
SDC4-201ENST00000372733 TESK1Q15569 626 aa13.9□□□□□ -0.18
SDC4-201ENST00000372733 OR8G2PQ6IF36 304 aa13.9□□□□□ -0.18
SDC4-201ENST00000372733 LSM10Q969L4 123 aaKnown RBP13.9□□□□□ -0.18
SDC4-201ENST00000372733 HIST1H2AAQ96QV6 131 aa13.9□□□□□ -0.18
SDC4-201ENST00000372733 R4GN57 208 aa13.9□□□□□ -0.18
SDC4-201ENST00000372733 SERF2P84101 59 aa13.89□□□□□ -0.19
SDC4-201ENST00000372733 RTP5Q14D33 572 aa13.89□□□□□ -0.19
SDC4-201ENST00000372733 ZNF585BQ52M93 769 aa13.89□□□□□ -0.19
SDC4-201ENST00000372733 RPP25LQ8N5L8 163 aaKnown RBP13.89□□□□□ -0.19
SDC4-201ENST00000372733 APOBEC3DQ96AK3 386 aaPredicted RBP13.89□□□□□ -0.19
SDC4-201ENST00000372733 ELOVL1Q9BW60 279 aa13.89□□□□□ -0.19
SDC4-201ENST00000372733 SRD5A3Q9H8P0 318 aa13.89□□□□□ -0.19
SDC4-201ENST00000372733 SLC25A22Q9H936 323 aa13.89□□□□□ -0.19
SDC4-201ENST00000372733 NAT8Q9UHE5 227 aa13.89□□□□□ -0.19
SDC4-201ENST00000372733 RBM7Q9Y580 266 aaKnown RBP13.89□□□□□ -0.19
SDC4-201ENST00000372733 TNRC18O15417 2968 aaPredicted RBP13.89□□□□□ -0.19
SDC4-201ENST00000372733 TNRC6AQ8NDV7 1962 aaKnown RBP13.89□□□□□ -0.19
SDC4-201ENST00000372733 TRBV6-6A0A0A6YYG2 114 aa13.89□□□□□ -0.19
SDC4-201ENST00000372733 RHBDL1O75783 438 aa13.89□□□□□ -0.19
SDC4-201ENST00000372733 CXCL12P48061 93 aa13.89□□□□□ -0.19
SDC4-201ENST00000372733 SLC38A11Q08AI6 406 aa13.89□□□□□ -0.19
SDC4-201ENST00000372733 P2RY6Q15077 328 aa13.89□□□□□ -0.19
SDC4-201ENST00000372733 TCEAL6Q6IPX3 200 aa13.89□□□□□ -0.19
SDC4-201ENST00000372733 CYP2G1PQ6ZSU1 146 aa13.89□□□□□ -0.19
SDC4-201ENST00000372733 DMRTC2Q8IXT2 367 aaPredicted RBP13.89□□□□□ -0.19
SDC4-201ENST00000372733 FAM58AQ8N1B3 248 aa13.89□□□□□ -0.19
SDC4-201ENST00000372733 OR5A2Q8NGI9 324 aa13.89□□□□□ -0.19
SDC4-201ENST00000372733 OR5R1Q8NH85 324 aa13.89□□□□□ -0.19
SDC4-201ENST00000372733 TAF15Q92804 592 aaKnown RBP eCLIP13.89□□□□□ -0.19
SDC4-201ENST00000372733 TMEM45BQ96B21 275 aa13.89□□□□□ -0.19
SDC4-201ENST00000372733 DEGS1O15121 323 aa13.88□□□□□ -0.19
SDC4-201ENST00000372733 WDR1O75083 606 aa13.88□□□□□ -0.19
SDC4-201ENST00000372733 PFN1P07737 140 aaKnown RBP13.88□□□□□ -0.19
SDC4-201ENST00000372733 GZMHP20718 246 aa13.88□□□□□ -0.19
SDC4-201ENST00000372733 GFRA1P56159 465 aa13.88□□□□□ -0.19
SDC4-201ENST00000372733 MEF2BQ02080 365 aaPredicted RBP13.88□□□□□ -0.19
SDC4-201ENST00000372733 OR5P3Q8WZ94 311 aa13.88□□□□□ -0.19
SDC4-201ENST00000372733 PRSS50Q9UI38 385 aa13.88□□□□□ -0.19
SDC4-201ENST00000372733 GZMBP10144 247 aa13.88□□□□□ -0.19
SDC4-201ENST00000372733 PPP1R32Q7Z5V6 425 aa13.88□□□□□ -0.19
SDC4-201ENST00000372733 OR1P1Q8NH06 330 aa13.88□□□□□ -0.19
SDC4-201ENST00000372733 TMEM9BQ9NQ34 198 aa13.88□□□□□ -0.19
SDC4-201ENST00000372733 SLC39A9Q9NUM3 307 aa13.88□□□□□ -0.19
SDC4-201ENST00000372733 SSTP61278 116 aa13.87□□□□□ -0.19
SDC4-201ENST00000372733 RPL23P62829 140 aaKnown RBP13.87□□□□□ -0.19
SDC4-201ENST00000372733 JOSD1Q15040 202 aaPredicted RBP13.87□□□□□ -0.19
SDC4-201ENST00000372733 TMEM241Q24JQ0 296 aa13.87□□□□□ -0.19
SDC4-201ENST00000372733 BSXQ3C1V8 233 aa13.87□□□□□ -0.19
SDC4-201ENST00000372733 NRN1LQ496H8 165 aa13.87□□□□□ -0.19
SDC4-201ENST00000372733 ACSF3Q4G176 576 aaPredicted RBP13.87□□□□□ -0.19
SDC4-201ENST00000372733 ACSM6Q6P461 480 aa13.87□□□□□ -0.19
SDC4-201ENST00000372733 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.87□□□□□ -0.19
SDC4-201ENST00000372733 TUSC5Q8IXB3 177 aa13.87□□□□□ -0.19
SDC4-201ENST00000372733 GATAD1Q8WUU5 269 aa13.87□□□□□ -0.19
SDC4-201ENST00000372733 PINX1Q96BK5 328 aaKnown RBP13.87□□□□□ -0.19
SDC4-201ENST00000372733 A0A1W2PR80 420 aa13.87□□□□□ -0.19
SDC4-201ENST00000372733 SS18L1O75177 396 aaPredicted RBP13.87□□□□□ -0.19
SDC4-201ENST00000372733 KBTBD11O94819 623 aa13.87□□□□□ -0.19
SDC4-201ENST00000372733 IFNA10P01566 189 aa13.87□□□□□ -0.19
SDC4-201ENST00000372733 NDUFB7P17568 137 aa13.87□□□□□ -0.19
SDC4-201ENST00000372733 XKRY2A2RUG3 117 aa13.86□□□□□ -0.19
SDC4-201ENST00000372733 H7BYZ3 331 aa13.86□□□□□ -0.19
SDC4-201ENST00000372733 SIRPB1O00241 398 aa13.86□□□□□ -0.19
SDC4-201ENST00000372733 CLDN1O95832 211 aa13.86□□□□□ -0.19
SDC4-201ENST00000372733 CELA3AP09093 270 aa13.86□□□□□ -0.19
SDC4-201ENST00000372733 GALR1P47211 349 aa13.86□□□□□ -0.19
SDC4-201ENST00000372733 LINC00596Q86U02 117 aa13.86□□□□□ -0.19
SDC4-201ENST00000372733 AGMATQ9BSE5 352 aa13.86□□□□□ -0.19
SDC4-201ENST00000372733 LIN7CQ9NUP9 197 aaKnown RBP13.86□□□□□ -0.19
SDC4-201ENST00000372733 CELSR3Q9NYQ7 3312 aa13.86□□□□□ -0.19
SDC4-201ENST00000372733 OR51G1Q8NGK1 321 aa13.86□□□□□ -0.19
SDC4-201ENST00000372733 PYGO2Q9BRQ0 406 aa13.86□□□□□ -0.19
SDC4-201ENST00000372733 PCGF1Q9BSM1 259 aa13.86□□□□□ -0.19
SDC4-201ENST00000372733 UBE2ZQ9H832 354 aaPredicted RBP13.86□□□□□ -0.19
SDC4-201ENST00000372733 ESPL1Q14674 2120 aa13.85□□□□□ -0.19
SDC4-201ENST00000372733 PIGBOS1A0A0B4J2F0 54 aa13.85□□□□□ -0.19
SDC4-201ENST00000372733 A0A1W2PPQ1 181 aa13.85□□□□□ -0.19
SDC4-201ENST00000372733 ANKRD30BLA7E2S9 258 aa13.85□□□□□ -0.19
SDC4-201ENST00000372733 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.85□□□□□ -0.19
SDC4-201ENST00000372733 SLC31A2O15432 143 aa13.85□□□□□ -0.19
SDC4-201ENST00000372733 WNT2P09544 360 aa13.85□□□□□ -0.19
SDC4-201ENST00000372733 PAX1P15863 534 aa13.85□□□□□ -0.19
SDC4-201ENST00000372733 GNG3P63215 75 aa13.85□□□□□ -0.19
SDC4-201ENST00000372733 ZNF573Q86YE8 665 aa13.85□□□□□ -0.19
SDC4-201ENST00000372733 POM121L2Q96KW2 1035 aa13.85□□□□□ -0.19
SDC4-201ENST00000372733 PARLQ9H300 379 aa13.85□□□□□ -0.19
SDC4-201ENST00000372733 DMDP11532 3685 aa13.85□□□□□ -0.19
SDC4-201ENST00000372733 MUC3AQ02505 3323 aa13.85□□□□□ -0.19
SDC4-201ENST00000372733 IGKV3D-15A0A087WSY6 115 aa13.85□□□□□ -0.19
SDC4-201ENST00000372733 NPIPB11E5RHQ5 1161 aa13.85□□□□□ -0.19
SDC4-201ENST00000372733 DVL1O14640 695 aa13.85□□□□□ -0.19
SDC4-201ENST00000372733 FGF7P21781 194 aa13.85□□□□□ -0.19
SDC4-201ENST00000372733 CA6P23280 308 aa13.85□□□□□ -0.19
SDC4-201ENST00000372733 RPS16P62249 146 aaKnown RBP13.85□□□□□ -0.19
SDC4-201ENST00000372733 SPATA46Q5T0L3 261 aa13.85□□□□□ -0.19
SDC4-201ENST00000372733 ZNF66Q6ZN08 573 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms