RNA–Protein interactions for RNA: ENST00000364739.1

RNU4-28P-201, Transcript of RNA, U4 small nuclear 28, pseudogene, humanhuman

BASIC

Gene RNU4-28P, Length 141 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-28P-201ENST00000364739 TSPEAR-AS2P59090 65 aa0.74□□□□□ -2.29
RNU4-28P-201ENST00000364739 ERHP84090 104 aaKnown RBP0.74□□□□□ -2.29
RNU4-28P-201ENST00000364739 ZNF90Q03938 601 aa0.74□□□□□ -2.29
RNU4-28P-201ENST00000364739 DOLPP1Q86YN1 238 aa0.74□□□□□ -2.29
RNU4-28P-201ENST00000364739 ANGPTL6Q8NI99 470 aa0.74□□□□□ -2.29
RNU4-28P-201ENST00000364739 DTD1Q8TEA8 209 aa0.74□□□□□ -2.29
RNU4-28P-201ENST00000364739 MND1Q9BWT6 205 aa0.74□□□□□ -2.29
RNU4-28P-201ENST00000364739 CDCA4Q9BXL8 241 aa0.74□□□□□ -2.29
RNU4-28P-201ENST00000364739 PUS1Q9Y606 427 aaKnown RBP eCLIP0.74□□□□□ -2.29
RNU4-28P-201ENST00000364739 POLEQ07864 2286 aa0.73□□□□□ -2.29
RNU4-28P-201ENST00000364739 RAB3GAP2Q9H2M9 1393 aa0.73□□□□□ -2.29
RNU4-28P-201ENST00000364739 TMSB15BA0A087X1C1 80 aa0.73□□□□□ -2.29
RNU4-28P-201ENST00000364739 E7EWF7 191 aa0.73□□□□□ -2.29
RNU4-28P-201ENST00000364739 HMMRO75330 724 aa0.73□□□□□ -2.29
RNU4-28P-201ENST00000364739 AKR1C4P17516 323 aa0.73□□□□□ -2.29
RNU4-28P-201ENST00000364739 ORM2P19652 201 aa0.73□□□□□ -2.29
RNU4-28P-201ENST00000364739 CRHBPP24387 322 aa0.73□□□□□ -2.29
RNU4-28P-201ENST00000364739 STK38Q15208 465 aa0.73□□□□□ -2.29
RNU4-28P-201ENST00000364739 HENMT1Q5T8I9 393 aaKnown RBP0.73□□□□□ -2.29
RNU4-28P-201ENST00000364739 PDCL2Q8N4E4 241 aa0.73□□□□□ -2.29
RNU4-28P-201ENST00000364739 BCL7BQ9BQE9 202 aa0.73□□□□□ -2.29
RNU4-28P-201ENST00000364739 MED18Q9BUE0 208 aa0.73□□□□□ -2.29
RNU4-28P-201ENST00000364739 GTSF1LQ9H1H1 148 aa0.73□□□□□ -2.29
RNU4-28P-201ENST00000364739 NCOR1P1Q9H4R4 102 aa0.73□□□□□ -2.29
RNU4-28P-201ENST00000364739 SNX12Q9UMY4 172 aa0.73□□□□□ -2.29
RNU4-28P-201ENST00000364739 FIS1Q9Y3D6 152 aa0.73□□□□□ -2.29
RNU4-28P-201ENST00000364739 DISP1Q96F81 1524 aa0.73□□□□□ -2.29
RNU4-28P-201ENST00000364739 ZNF532Q9HCE3 1301 aa0.72□□□□□ -2.29
RNU4-28P-201ENST00000364739 ZNF705FA8MVS1 300 aaPredicted RBP0.72□□□□□ -2.29
RNU4-28P-201ENST00000364739 UBE2KP61086 200 aa0.72□□□□□ -2.29
RNU4-28P-201ENST00000364739 CD164Q04900 197 aa0.72□□□□□ -2.29
RNU4-28P-201ENST00000364739 HINT2Q9BX68 163 aa0.72□□□□□ -2.29
RNU4-28P-201ENST00000364739 METTL17Q9H7H0 456 aaPredicted RBP0.72□□□□□ -2.29
RNU4-28P-201ENST00000364739 BABAM2Q9NXR7 383 aa0.72□□□□□ -2.29
RNU4-28P-201ENST00000364739 RABL2AQ9UBK7 228 aaPredicted RBP0.72□□□□□ -2.29
RNU4-28P-201ENST00000364739 ALG5Q9Y673 324 aa0.72□□□□□ -2.29
RNU4-28P-201ENST00000364739 CUL9Q8IWT3 2517 aa0.72□□□□□ -2.29
RNU4-28P-201ENST00000364739 GSTTP1A0A1W2PQM5 241 aa0.71□□□□□ -2.3
RNU4-28P-201ENST00000364739 C2orf74A8MZ97 194 aa0.71□□□□□ -2.3
RNU4-28P-201ENST00000364739 SFTPCP11686 197 aa0.71□□□□□ -2.3
RNU4-28P-201ENST00000364739 PTNP21246 168 aa0.71□□□□□ -2.3
RNU4-28P-201ENST00000364739 SERPINB10P48595 397 aa0.71□□□□□ -2.3
RNU4-28P-201ENST00000364739 ACTBP60709 375 aa0.71□□□□□ -2.3
RNU4-28P-201ENST00000364739 ACTG1P63261 375 aa0.71□□□□□ -2.3
RNU4-28P-201ENST00000364739 CTAG1AP78358 180 aa0.71□□□□□ -2.3
RNU4-28P-201ENST00000364739 PAFAH1B3Q15102 231 aaKnown RBP0.71□□□□□ -2.3
RNU4-28P-201ENST00000364739 HNRNPA1L2Q32P51 320 aaKnown RBP0.71□□□□□ -2.3
RNU4-28P-201ENST00000364739 ZNF791Q3KP31 576 aaPredicted RBP0.71□□□□□ -2.3
RNU4-28P-201ENST00000364739 NKAIN1Q4KMZ8 207 aa0.71□□□□□ -2.3
RNU4-28P-201ENST00000364739 CATSPER2Q96P56 530 aa0.71□□□□□ -2.3
RNU4-28P-201ENST00000364739 DMAC2Q9NW81 257 aa0.71□□□□□ -2.3
RNU4-28P-201ENST00000364739 SOX21Q9Y651 276 aaPredicted RBP0.71□□□□□ -2.3
RNU4-28P-201ENST00000364739 LINC00862A6NCI5 91 aa0.7□□□□□ -2.3
RNU4-28P-201ENST00000364739 TMEM235A6NFC5 223 aa0.7□□□□□ -2.3
RNU4-28P-201ENST00000364739 GADD45AP24522 165 aa0.7□□□□□ -2.3
RNU4-28P-201ENST00000364739 ACTR1BP42025 376 aa0.7□□□□□ -2.3
RNU4-28P-201ENST00000364739 PSG3Q16557 428 aa0.7□□□□□ -2.3
RNU4-28P-201ENST00000364739 TRMT12Q53H54 448 aaKnown RBP0.7□□□□□ -2.3
RNU4-28P-201ENST00000364739 CHCHD2P9Q5T1J5 151 aaPredicted RBP0.7□□□□□ -2.3
RNU4-28P-201ENST00000364739 OR4P4Q8NGL7 312 aa0.7□□□□□ -2.3
RNU4-28P-201ENST00000364739 FAM45AQ8TCE6 357 aa0.7□□□□□ -2.3
RNU4-28P-201ENST00000364739 TECTAO75443 2155 aa0.7□□□□□ -2.3
RNU4-28P-201ENST00000364739 NAV1Q8NEY1 1877 aa0.69□□□□□ -2.3
RNU4-28P-201ENST00000364739 ARFGEF3Q5TH69 2177 aa0.69□□□□□ -2.3
RNU4-28P-201ENST00000364739 IGKV2-40A0A087WW87 121 aaPredicted RBP0.69□□□□□ -2.3
RNU4-28P-201ENST00000364739 ZW10O43264 779 aa0.69□□□□□ -2.3
RNU4-28P-201ENST00000364739 PGLYRP1O75594 196 aaPredicted RBP0.69□□□□□ -2.3
RNU4-28P-201ENST00000364739 IGKV2D-40P01614 121 aaPredicted RBP0.69□□□□□ -2.3
RNU4-28P-201ENST00000364739 ZNF728P0DKX0 622 aa0.69□□□□□ -2.3
RNU4-28P-201ENST00000364739 C1QTNF8P60827 252 aa0.69□□□□□ -2.3
RNU4-28P-201ENST00000364739 VSNL1P62760 191 aa0.69□□□□□ -2.3
RNU4-28P-201ENST00000364739 CENPWQ5EE01 88 aa0.69□□□□□ -2.3
RNU4-28P-201ENST00000364739 SSX6Q7RTT6 188 aa0.69□□□□□ -2.3
RNU4-28P-201ENST00000364739 TMEM75Q8N9X5 138 aa0.69□□□□□ -2.3
RNU4-28P-201ENST00000364739 LHFPL5Q8TAF8 219 aa0.69□□□□□ -2.3
RNU4-28P-201ENST00000364739 MRAP2Q96G30 205 aa0.69□□□□□ -2.3
RNU4-28P-201ENST00000364739 Q96M85 177 aa0.69□□□□□ -2.3
RNU4-28P-201ENST00000364739 TRNT1Q96Q11 434 aaKnown RBP0.69□□□□□ -2.3
RNU4-28P-201ENST00000364739 DNAJC12Q9UKB3 198 aa0.69□□□□□ -2.3
RNU4-28P-201ENST00000364739 NXT1Q9UKK6 140 aaKnown RBP0.69□□□□□ -2.3
RNU4-28P-201ENST00000364739 BZW2Q9Y6E2 419 aaKnown RBP0.69□□□□□ -2.3
RNU4-28P-201ENST00000364739 CHD5Q8TDI0 1954 aa0.68□□□□□ -2.3
RNU4-28P-201ENST00000364739 ABCB11O95342 1321 aa0.68□□□□□ -2.3
RNU4-28P-201ENST00000364739 TRAV41A0A0B4J266 112 aa0.68□□□□□ -2.3
RNU4-28P-201ENST00000364739 IGKV3D-7A0A0C4DH55 119 aa0.68□□□□□ -2.3
RNU4-28P-201ENST00000364739 IGKV3OR2-268A0A0C4DH90 116 aa0.68□□□□□ -2.3
RNU4-28P-201ENST00000364739 TRBV6-5A0A0K0K1A5 114 aa0.68□□□□□ -2.3
RNU4-28P-201ENST00000364739 A0A1B0GW15 77 aa0.68□□□□□ -2.3
RNU4-28P-201ENST00000364739 H3BSA7 217 aa0.68□□□□□ -2.3
RNU4-28P-201ENST00000364739 FABP7O15540 132 aa0.68□□□□□ -2.3
RNU4-28P-201ENST00000364739 C1QCP02747 245 aa0.68□□□□□ -2.3
RNU4-28P-201ENST00000364739 CCL3P10147 92 aa0.68□□□□□ -2.3
RNU4-28P-201ENST00000364739 CRYBB3P26998 211 aa0.68□□□□□ -2.3
RNU4-28P-201ENST00000364739 UGT2B10P36537 528 aa0.68□□□□□ -2.3
RNU4-28P-201ENST00000364739 PSMB3P49720 205 aa0.68□□□□□ -2.3
RNU4-28P-201ENST00000364739 TSPAN5P62079 268 aa0.68□□□□□ -2.3
RNU4-28P-201ENST00000364739 TMEM31Q5JXX7 168 aa0.68□□□□□ -2.3
RNU4-28P-201ENST00000364739 CPAMD8Q8IZJ3 1885 aa0.68□□□□□ -2.3
RNU4-28P-201ENST00000364739 CDRT4Q8N9R6 151 aa0.68□□□□□ -2.3
RNU4-28P-201ENST00000364739 OR8B12Q8NGG6 310 aa0.68□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms