RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 CTSDP07339 412 aaPredicted RBP7.61□□□□□ -1.19
UPF2-202ENST00000357604 PF4V1P10720 104 aa7.61□□□□□ -1.19
UPF2-202ENST00000357604 MAS1LP35410 378 aa7.61□□□□□ -1.19
UPF2-202ENST00000357604 COMPP49747 757 aaPredicted RBP7.61□□□□□ -1.19
UPF2-202ENST00000357604 ZNF816Q0VGE8 651 aaPredicted RBP7.61□□□□□ -1.19
UPF2-202ENST00000357604 ZNF626Q68DY1 528 aa7.61□□□□□ -1.19
UPF2-202ENST00000357604 FAM219AQ8IW50 185 aa7.61□□□□□ -1.19
UPF2-202ENST00000357604 MMD2Q8IY49 270 aa7.61□□□□□ -1.19
UPF2-202ENST00000357604 WFDC11Q8NEX6 87 aa7.61□□□□□ -1.19
UPF2-202ENST00000357604 GIMAP1Q8WWP7 306 aa7.61□□□□□ -1.19
UPF2-202ENST00000357604 RANBP3Q9H6Z4 567 aaPredicted RBP7.61□□□□□ -1.19
UPF2-202ENST00000357604 MTFP1Q9UDX5 166 aa7.61□□□□□ -1.19
UPF2-202ENST00000357604 TEX46H3BTG2 121 aa7.61□□□□□ -1.19
UPF2-202ENST00000357604 CTDSP2O14595 271 aa7.61□□□□□ -1.19
UPF2-202ENST00000357604 PF4P02776 101 aa7.61□□□□□ -1.19
UPF2-202ENST00000357604 HNF4GQ14541 408 aa7.61□□□□□ -1.19
UPF2-202ENST00000357604 ZNF260Q3ZCT1 412 aa7.61□□□□□ -1.19
UPF2-202ENST00000357604 MAPK1IP1LQ8NDC0 245 aa7.61□□□□□ -1.19
UPF2-202ENST00000357604 SCGB1C1Q8TD33 95 aa7.61□□□□□ -1.19
UPF2-202ENST00000357604 BDP1A6H8Y1 2624 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 C17orf98A8MV24 154 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 C12orf77C9JDV5 145 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 SPDEFO95238 335 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 PIGPP57054 158 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 CTF1Q16619 201 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 HSD17B13Q7Z5P4 300 aaPredicted RBP7.6□□□□□ -1.19
UPF2-202ENST00000357604 STX12Q86Y82 276 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 INO80EQ8NBZ0 244 aaPredicted RBP7.6□□□□□ -1.19
UPF2-202ENST00000357604 PLPPR1Q8TBJ4 325 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 R3HDM4Q96D70 268 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 KCNK15Q9H427 330 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 NUP214P35658 2090 aaPredicted RBP7.6□□□□□ -1.19
UPF2-202ENST00000357604 F5H0A9 414 aaPredicted RBP7.6□□□□□ -1.19
UPF2-202ENST00000357604 TNFSF12O43508 249 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 PPYP01298 95 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 NQO2P16083 231 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 AADACP22760 399 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 ERVK11-1P61568 191 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 LAIR2Q6ISS4 152 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 C8orf31Q8N9H6 132 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 TMEM104Q8NE00 496 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 LIME1Q9H400 295 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 TMEM231Q9H6L2 316 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 RCC2Q9P258 522 aaKnown RBP7.6□□□□□ -1.19
UPF2-202ENST00000357604 TIMM23O14925 209 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 HMGN3Q15651 99 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 C3orf56Q8N813 242 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 DYRK2Q92630 601 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 RNF114Q9Y508 228 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 CRYZL1O95825 349 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 LY6G6DO95868 133 aa7.6□□□□□ -1.19
UPF2-202ENST00000357604 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.6□□□□□ -1.19
UPF2-202ENST00000357604 C3orf85A0A1B0GTC6 90 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 DUXBA0A1W2PPF3 345 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 ITGB1BP1O14713 200 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 ARPC1BO15143 372 aaKnown RBP7.59□□□□□ -1.19
UPF2-202ENST00000357604 NDUFS7O75251 213 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 HLA-AP01891 365 aaKnown RBP7.59□□□□□ -1.19
UPF2-202ENST00000357604 FAM157CP0CG43 387 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 CCL3L1P16619 93 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 OMGP23515 440 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 SSTR5P35346 364 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 SSX9Q7RTT3 188 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 WDR86Q86TI4 376 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 LILRB2Q8N423 598 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 SIGLECL1Q8N7X8 197 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 PARP11Q9NR21 331 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 PTTG1O95997 202 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 MT-CO2P00403 227 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 IGKV1D-33P01593 117 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 IGKV1-33P01594 117 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 HOXB4P17483 251 aaPredicted RBP7.59□□□□□ -1.19
UPF2-202ENST00000357604 HLA-DRB5Q30154 266 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 SLC35E3Q7Z769 313 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 UBALD1Q8TB05 177 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 HEYLQ9NQ87 328 aaPredicted RBP7.59□□□□□ -1.19
UPF2-202ENST00000357604 LOXP28300 417 aaPredicted RBP7.59□□□□□ -1.19
UPF2-202ENST00000357604 DNM1P46Q6ZS02 220 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 FAM89BQ8N5H3 189 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 C12orf45Q8N5I9 185 aaPredicted RBP7.59□□□□□ -1.19
UPF2-202ENST00000357604 BVESQ8NE79 360 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 C8orf46Q8TAG6 207 aa7.59□□□□□ -1.19
UPF2-202ENST00000357604 RTN4IP1Q8WWV3 396 aaPredicted RBP7.59□□□□□ -1.19
UPF2-202ENST00000357604 RBMX2Q9Y388 322 aaKnown RBP7.59□□□□□ -1.19
UPF2-202ENST00000357604 CNOT1A5YKK6 2376 aaKnown RBP7.59□□□□□ -1.19
UPF2-202ENST00000357604 TRAV6A0A075B6T7 132 aa7.59□□□□□ -1.2
UPF2-202ENST00000357604 A0A1W2PPE3 182 aa7.59□□□□□ -1.2
UPF2-202ENST00000357604 MFNGO00587 321 aa7.59□□□□□ -1.2
UPF2-202ENST00000357604 IFNA10P01566 189 aa7.59□□□□□ -1.2
UPF2-202ENST00000357604 SULT1A3P0DMM9 295 aa7.59□□□□□ -1.2
UPF2-202ENST00000357604 SULT1A4P0DMN0 295 aa7.59□□□□□ -1.2
UPF2-202ENST00000357604 DGCR2P98153 550 aa7.59□□□□□ -1.2
UPF2-202ENST00000357604 OR2B11Q5JQS5 317 aa7.59□□□□□ -1.2
UPF2-202ENST00000357604 VAX1Q5SQQ9 334 aa7.59□□□□□ -1.2
UPF2-202ENST00000357604 OR51S1Q8NGJ8 323 aa7.59□□□□□ -1.2
UPF2-202ENST00000357604 OR56B4Q8NH76 319 aa7.59□□□□□ -1.2
UPF2-202ENST00000357604 OSR1Q8TAX0 266 aaPredicted RBP7.59□□□□□ -1.2
UPF2-202ENST00000357604 GRAMD2BQ96HH9 432 aa7.59□□□□□ -1.2
UPF2-202ENST00000357604 C5orf63A6NC05 138 aa7.58□□□□□ -1.2
UPF2-202ENST00000357604 C17orf112F2Z3M2 114 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms