RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 hADV38S2A0JD32 116 aa16.96■□□□□ 0.31
CCDC88B-202ENST00000356786 IL11P20809 199 aa16.96■□□□□ 0.31
CCDC88B-202ENST00000356786 POC1AQ8NBT0 407 aa16.96■□□□□ 0.31
CCDC88B-202ENST00000356786 OR4X1Q8NH49 305 aa16.96■□□□□ 0.31
CCDC88B-202ENST00000356786 GPHA2Q96T91 129 aa16.96■□□□□ 0.31
CCDC88B-202ENST00000356786 CXXC4Q9H2H0 198 aa16.96■□□□□ 0.31
CCDC88B-202ENST00000356786 ZNF729A6NN14 1252 aaPredicted RBP16.96■□□□□ 0.31
CCDC88B-202ENST00000356786 MOSPD3O75425 235 aa16.96■□□□□ 0.31
CCDC88B-202ENST00000356786 AGAP20933 346 aa16.96■□□□□ 0.31
CCDC88B-202ENST00000356786 GAB4Q2WGN9 574 aa16.96■□□□□ 0.31
CCDC88B-202ENST00000356786 ABHD3Q8WU67 409 aa16.96■□□□□ 0.31
CCDC88B-202ENST00000356786 PTPRFP10586 1907 aa16.96■□□□□ 0.31
CCDC88B-202ENST00000356786 SPINT1O43278 529 aa16.96■□□□□ 0.31
CCDC88B-202ENST00000356786 VSTM2AQ8TAG5 236 aa16.96■□□□□ 0.31
CCDC88B-202ENST00000356786 RPEQ96AT9 228 aa16.96■□□□□ 0.31
CCDC88B-202ENST00000356786 NCBP2LA6PVI3 153 aaKnown RBP16.96■□□□□ 0.31
CCDC88B-202ENST00000356786 PLPPR5Q32ZL2 321 aa16.96■□□□□ 0.31
CCDC88B-202ENST00000356786 ZNF488Q96MN9 340 aa16.96■□□□□ 0.31
CCDC88B-202ENST00000356786 C2CD4DB7Z1M9 353 aa16.95■□□□□ 0.3
CCDC88B-202ENST00000356786 H0Y980 276 aa16.95■□□□□ 0.3
CCDC88B-202ENST00000356786 TNFSF15O95150 251 aa16.95■□□□□ 0.3
CCDC88B-202ENST00000356786 SCTP09683 121 aa16.95■□□□□ 0.3
CCDC88B-202ENST00000356786 EFNB1P98172 346 aa16.95■□□□□ 0.3
CCDC88B-202ENST00000356786 GABRG3Q99928 467 aa16.95■□□□□ 0.3
CCDC88B-202ENST00000356786 C5orf52A6NGY3 159 aa16.95■□□□□ 0.3
CCDC88B-202ENST00000356786 SLC35E4Q6ICL7 350 aa16.95■□□□□ 0.3
CCDC88B-202ENST00000356786 PARP14Q460N5 1801 aa16.95■□□□□ 0.3
CCDC88B-202ENST00000356786 ERGP11308 486 aa16.95■□□□□ 0.3
CCDC88B-202ENST00000356786 PRF1P14222 555 aa16.95■□□□□ 0.3
CCDC88B-202ENST00000356786 ZP4Q12836 540 aa16.95■□□□□ 0.3
CCDC88B-202ENST00000356786 GAL3ST2Q9H3Q3 398 aa16.95■□□□□ 0.3
CCDC88B-202ENST00000356786 OR2T8A6NH00 312 aa16.95■□□□□ 0.3
CCDC88B-202ENST00000356786 WNT5AP41221 380 aa16.95■□□□□ 0.3
CCDC88B-202ENST00000356786 TCTAP57738 103 aa16.95■□□□□ 0.3
CCDC88B-202ENST00000356786 TM4SF19Q96DZ7 209 aa16.95■□□□□ 0.3
CCDC88B-202ENST00000356786 ATG101Q9BSB4 218 aa16.95■□□□□ 0.3
CCDC88B-202ENST00000356786 COMPP49747 757 aaPredicted RBP16.94■□□□□ 0.3
CCDC88B-202ENST00000356786 PMCHL1Q16048 86 aa16.94■□□□□ 0.3
CCDC88B-202ENST00000356786 SFTPA2Q8IWL1 248 aa16.94■□□□□ 0.3
CCDC88B-202ENST00000356786 TUSC5Q8IXB3 177 aa16.94■□□□□ 0.3
CCDC88B-202ENST00000356786 EIF4E3Q8N5X7 224 aaKnown RBP16.94■□□□□ 0.3
CCDC88B-202ENST00000356786 GPR35Q9HC97 309 aa16.94■□□□□ 0.3
CCDC88B-202ENST00000356786 RNF224P0DH78 156 aa16.94■□□□□ 0.3
CCDC88B-202ENST00000356786 ABHD14BQ96IU4 210 aa16.94■□□□□ 0.3
CCDC88B-202ENST00000356786 MRPL18Q9H0U6 180 aaKnown RBP16.94■□□□□ 0.3
CCDC88B-202ENST00000356786 UFC1Q9Y3C8 167 aa16.94■□□□□ 0.3
CCDC88B-202ENST00000356786 PXMP4Q9Y6I8 212 aa16.94■□□□□ 0.3
CCDC88B-202ENST00000356786 SMAD4Q13485 552 aaKnown RBP16.94■□□□□ 0.3
CCDC88B-202ENST00000356786 F5H697 171 aa16.94■□□□□ 0.3
CCDC88B-202ENST00000356786 HIST1H1BP16401 226 aaKnown RBP16.94■□□□□ 0.3
CCDC88B-202ENST00000356786 PSMB2P49721 201 aa16.94■□□□□ 0.3
CCDC88B-202ENST00000356786 C12orf54Q6X4T0 127 aa16.94■□□□□ 0.3
CCDC88B-202ENST00000356786 NPVFQ9HCQ7 196 aa16.94■□□□□ 0.3
CCDC88B-202ENST00000356786 WIPI2Q9Y4P8 454 aa16.94■□□□□ 0.3
CCDC88B-202ENST00000356786 SNRPCP09234 159 aaKnown RBP16.93■□□□□ 0.3
CCDC88B-202ENST00000356786 CD40P25942 277 aa16.93■□□□□ 0.3
CCDC88B-202ENST00000356786 C10orf113Q5VZT2 155 aa16.93■□□□□ 0.3
CCDC88B-202ENST00000356786 CADM4Q8NFZ8 388 aa16.93■□□□□ 0.3
CCDC88B-202ENST00000356786 OR2M3Q8NG83 312 aa16.93■□□□□ 0.3
CCDC88B-202ENST00000356786 RBKSQ9H477 322 aa16.93■□□□□ 0.3
CCDC88B-202ENST00000356786 LNP1A1A4G5 178 aa16.93■□□□□ 0.3
CCDC88B-202ENST00000356786 TXNDC17Q9BRA2 123 aa16.93■□□□□ 0.3
CCDC88B-202ENST00000356786 MYOZ1Q9NP98 299 aaPredicted RBP16.93■□□□□ 0.3
CCDC88B-202ENST00000356786 PRNDQ9UKY0 176 aa16.93■□□□□ 0.3
CCDC88B-202ENST00000356786 LEMD1Q68G75 181 aa16.93■□□□□ 0.3
CCDC88B-202ENST00000356786 ZNF721Q8TF20 911 aa16.93■□□□□ 0.3
CCDC88B-202ENST00000356786 CISD1Q9NZ45 108 aaKnown RBP16.93■□□□□ 0.3
CCDC88B-202ENST00000356786 GRIFINA4D1Z8 144 aa16.93■□□□□ 0.3
CCDC88B-202ENST00000356786 CCL3P10147 92 aa16.93■□□□□ 0.3
CCDC88B-202ENST00000356786 RPS11P62280 158 aaKnown RBP eCLIP16.93■□□□□ 0.3
CCDC88B-202ENST00000356786 TNXAQ16473 311 aa16.93■□□□□ 0.3
CCDC88B-202ENST00000356786 FAM27BQ5VT28 67 aa16.93■□□□□ 0.3
CCDC88B-202ENST00000356786 TMEM183AQ8IXX5 376 aa16.93■□□□□ 0.3
CCDC88B-202ENST00000356786 ZPBPQ9BS86 351 aa16.93■□□□□ 0.3
CCDC88B-202ENST00000356786 NPTNQ9Y639 398 aa16.93■□□□□ 0.3
CCDC88B-202ENST00000356786 RNF222A6NCQ9 220 aa16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 CA2P00918 260 aa16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 UQCRFS1P47985 274 aa16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 MEOX1P50221 254 aa16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 AESQ08117 197 aa16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 SRSF9Q13242 221 aaKnown RBP eCLIP16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 SAP30LQ9HAJ7 183 aa16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 PILRAQ9UKJ1 303 aa16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 DHRS7CA6NNS2 312 aa16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 SYNGR1O43759 233 aa16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 NMUP48645 174 aa16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 STXBP6Q8NFX7 210 aa16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 C4orf51C9J302 202 aa16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 HLA-DQA1P01909 254 aa16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 TNFAIP6P98066 277 aaPredicted RBP16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 KIAA1644Q3SXP7 199 aa16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 NR2C2APQ86WQ0 139 aa16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 GPR146Q96CH1 333 aa16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 KCNK17Q96T54 332 aa16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 CCL17Q92583 94 aa16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 PARLQ9H300 379 aa16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 R4GN57 208 aa16.92■□□□□ 0.3
CCDC88B-202ENST00000356786 CEP250Q9BV73 2442 aa16.91■□□□□ 0.3
CCDC88B-202ENST00000356786 BTCP35070 178 aa16.91■□□□□ 0.3
CCDC88B-202ENST00000356786 HBZP02008 142 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms