RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 NOTCH3Q9UM47 2321 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 IGKV1-6A0A0C4DH72 117 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 IFNL4K9M1U5 179 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 TUSC2O75896 110 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 SCGNO76038 276 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 IGHV2-5P01817 119 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 CD37P11049 281 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 VAMP1P23763 118 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 HERV-K104P61576 105 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 LMO4P61968 165 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 HERPUD1Q15011 391 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 TOR2AQ5JU69 321 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 DCAF12L2Q5VW00 463 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 LYG1Q8N1E2 194 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 OR51H1Q8NH63 302 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 MARCH1Q8TCQ1 289 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 CASTOR1Q8WTX7 329 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 DUX5Q96PT3 197 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 GSX2Q9BZM3 304 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 C7orf69Q9H7B7 122 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 HRASLSQ9HDD0 168 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 Q9N2K0 584 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 DSCAML1Q8TD84 2053 aa7.59□□□□□ -1.19
USP4-202ENST00000351842 A0A0A6YYJ9 748 aa7.58□□□□□ -1.2
USP4-202ENST00000351842 FOXI3A8MTJ6 420 aaPredicted RBP7.58□□□□□ -1.2
USP4-202ENST00000351842 SLC31A2O15432 143 aa7.58□□□□□ -1.2
USP4-202ENST00000351842 HEXAP06865 529 aa7.58□□□□□ -1.2
USP4-202ENST00000351842 ZNF728P0DKX0 622 aa7.58□□□□□ -1.2
USP4-202ENST00000351842 MECP2P51608 486 aaKnown RBP7.58□□□□□ -1.2
USP4-202ENST00000351842 C4orf46Q504U0 113 aa7.58□□□□□ -1.2
USP4-202ENST00000351842 LIN54Q6MZP7 749 aa7.58□□□□□ -1.2
USP4-202ENST00000351842 GLDNQ6ZMI3 551 aaPredicted RBP7.58□□□□□ -1.2
USP4-202ENST00000351842 RAB39BQ96DA2 213 aa7.58□□□□□ -1.2
USP4-202ENST00000351842 MSI2Q96DH6 328 aaKnown RBP7.58□□□□□ -1.2
USP4-202ENST00000351842 OCSTAMPQ9BR26 566 aa7.58□□□□□ -1.2
USP4-202ENST00000351842 NUDT16L1Q9BRJ7 211 aaKnown RBP7.58□□□□□ -1.2
USP4-202ENST00000351842 RDH8Q9NYR8 311 aa7.58□□□□□ -1.2
USP4-202ENST00000351842 FBLN5Q9UBX5 448 aa7.58□□□□□ -1.2
USP4-202ENST00000351842 AKAIN1P0CW23 69 aa7.58□□□□□ -1.2
USP4-202ENST00000351842 AADACP22760 399 aa7.58□□□□□ -1.2
USP4-202ENST00000351842 SCAND1P57086 179 aa7.58□□□□□ -1.2
USP4-202ENST00000351842 TAS2R19P59542 299 aa7.58□□□□□ -1.2
USP4-202ENST00000351842 KLF9Q13886 244 aaPredicted RBP7.58□□□□□ -1.2
USP4-202ENST00000351842 HNF4GQ14541 408 aa7.58□□□□□ -1.2
USP4-202ENST00000351842 RUSC1-AS1Q66K80 236 aa7.58□□□□□ -1.2
USP4-202ENST00000351842 ZNF841Q6ZN19 808 aa7.58□□□□□ -1.2
USP4-202ENST00000351842 TCF23Q7RTU1 214 aa7.58□□□□□ -1.2
USP4-202ENST00000351842 ZNF69Q9UC07 566 aa7.58□□□□□ -1.2
USP4-202ENST00000351842 HSF4Q9ULV5 492 aa7.58□□□□□ -1.2
USP4-202ENST00000351842 TRAV40A0A0B4J280 105 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 TRDCB7Z8K6 153 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 NAPSAO96009 420 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 RAB13P51153 203 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 HLA-DRB3P79483 266 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 SP6Q3SY56 376 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 NHLRC3Q5JS37 347 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 OR5AP2Q8NGF4 316 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 DEDD2Q8WXF8 326 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 SEC22CQ9BRL7 303 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 OR2D2Q9H210 308 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 OR6C3Q9NZP0 311 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 C2CD3Q4AC94 2353 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 IGKV1D-13A0A0B4J2D9 117 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 LINC00862A6NCI5 91 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 ZNF98A6NK75 572 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 ARPC1BO15143 372 aaKnown RBP7.57□□□□□ -1.2
USP4-202ENST00000351842 GLAP06280 429 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 IGKV1-13P0DP09 117 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 ANXA7P20073 488 aaKnown RBP7.57□□□□□ -1.2
USP4-202ENST00000351842 DIAPH2-AS1Q14236 149 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 ARL6IP6Q8N6S5 226 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 Q8NFD4 153 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 OR2AK2Q8NG84 335 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 OR10X1Q8NGY0 326 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 ST8SIA2Q92186 375 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 HEXA-AS1Q9H8Q6 139 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 A0A0A6YYH2 397 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 A6NJ64 397 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 CSF1P09603 554 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 SULT1A3P0DMM9 295 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 SULT1A4P0DMN0 295 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 DHODHQ02127 395 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 ARL6IP1Q15041 203 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 PNLIPRP3Q17RR3 467 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 TMEM249Q2WGJ8 235 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 Q3ZCU0 254 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 RPL39P5Q59GN2 51 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 LINC00596Q86U02 117 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 HOGA1Q86XE5 327 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 OR11H7Q8NGC8 314 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 RANBP3Q9H6Z4 567 aaPredicted RBP7.57□□□□□ -1.2
USP4-202ENST00000351842 NECAP2Q9NVZ3 263 aa7.57□□□□□ -1.2
USP4-202ENST00000351842 KIR2DS1A0A191URI9 304 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 TCRBP04435 133 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 LIPFP07098 398 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 LMO1P25800 156 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 KIR2DS4P43632 304 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 KIR2DS1Q14954 304 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 SSX2Q16385 188 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 SLC35E4Q6ICL7 350 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms