RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 CHRNA10Q9GZZ6 450 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 ZFP30Q9Y2G7 519 aa5.78□□□□□ -1.48
VPS39-202ENST00000348544 ASCC3Q8N3C0 2202 aaKnown RBP5.77□□□□□ -1.49
VPS39-202ENST00000348544 TRBV11-1A0A0K0K1C0 115 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 hCG_38984A0A1B0GV85 526 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 PGPEP1LA6NFU8 196 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 HSPB6O14558 160 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 PAGE4O60829 102 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 VENTXO95231 258 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 C1QTNF9P0C862 333 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 SOX8P57073 446 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 MLF1P58340 268 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 PPP1CBP62140 327 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 PLCXD3Q63HM9 321 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 NEIL1Q96FI4 390 aaPredicted RBP5.77□□□□□ -1.49
VPS39-202ENST00000348544 HSPB9Q9BQS6 159 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 DERL1Q9BUN8 251 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 PARD6GQ9BYG4 376 aaPredicted RBP5.77□□□□□ -1.49
VPS39-202ENST00000348544 PCED1AQ9H1Q7 454 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 OR51B6Q9H340 312 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 FOXJ2Q9P0K8 574 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 ZNF407Q9C0G0 2248 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 LAMA1P25391 3075 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 CTXND1A0A1B0GTU2 59 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 A0A1B0GX78 115 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 F2Z2F3 143 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 BCL3P20749 454 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 CHRNB4P30926 498 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 MPLP40238 635 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 FUT6P51993 359 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 HBG1P69891 147 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 HBG2P69892 147 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 CFHR1Q03591 330 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 SLC38A11Q08AI6 406 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 SPANXN5Q5MJ07 72 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 FAM69BQ5VUD6 431 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 C20orf204Q6ZNR8 217 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 ANKRD37Q7Z713 158 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 VN1R17PQ8TDU5 208 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 PIGCQ92535 297 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 ZNF501Q96CX3 271 aaPredicted RBP5.77□□□□□ -1.49
VPS39-202ENST00000348544 WNT5BQ9H1J7 359 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 METTL7AQ9H8H3 244 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 MSL2Q9HCI7 577 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 ELOVL5Q9NYP7 299 aa5.77□□□□□ -1.49
VPS39-202ENST00000348544 YLPM1P49750 1951 aaKnown RBP5.77□□□□□ -1.49
VPS39-202ENST00000348544 HS3ST1O14792 307 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 CCL25O15444 150 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 RBFOX2O43251 390 aaKnown RBP eCLIP5.76□□□□□ -1.49
VPS39-202ENST00000348544 TRAPPC6AO75865 159 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 SERF1AO75920 110 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 IGLV2-14P01704 120 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 SERPINE2P07093 398 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 TDGF1P13385 188 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 BMP5P22003 454 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 CD38P28907 300 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 EPHA8P29322 1005 aaPredicted RBP5.76□□□□□ -1.49
VPS39-202ENST00000348544 LHX2P50458 406 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 BLKP51451 505 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 GNB1P62873 340 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 MMDQ15546 238 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 SRSF7Q16629 238 aaKnown RBP eCLIP5.76□□□□□ -1.49
VPS39-202ENST00000348544 TMEM183BQ1AE95 376 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 COL5A1-AS1Q5SY13 56 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 FAM27BQ5VT28 67 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 KIAA0895LQ68EN5 471 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 ZNF324BQ6AW86 544 aaPredicted RBP5.76□□□□□ -1.49
VPS39-202ENST00000348544 OR8G2PQ6IF36 304 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 RHBDD2Q6NTF9 364 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 STPG4Q8N801 248 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 Q8N976 141 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 ZIC4Q8N9L1 334 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 OR1F12Q8NHA8 337 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 LMX1AQ8TE12 382 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 OR5P3Q8WZ94 311 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 VAMP8Q9BV40 100 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 ULBP2Q9BZM5 246 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 FGF23Q9GZV9 251 aaPredicted RBP5.76□□□□□ -1.49
VPS39-202ENST00000348544 CRIM1Q9NZV1 1036 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 DOCK11Q5JSL3 2073 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 LNP1A1A4G5 178 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 CD300LBA8K4G0 201 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 C3orf80F5H4A9 247 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 CRYAAP02489 173 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 ESDP10768 282 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 YPEL3P61236 119 aaPredicted RBP5.76□□□□□ -1.49
VPS39-202ENST00000348544 SELENOTP62341 195 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 PMP22Q01453 160 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 FOXL1Q12952 345 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 DEFB133Q30KQ1 61 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 KRTAP27-1Q3LI81 207 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 TMEM240Q5SV17 173 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 AGBL5Q8NDL9 886 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 Q8NFD4 153 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 OR10G9Q8NGN4 311 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 OR10G7Q8NGN6 311 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 SGMS2Q8NHU3 365 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 KLHDC7BQ96G42 594 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 IGFLR1Q9H665 355 aa5.76□□□□□ -1.49
VPS39-202ENST00000348544 TMEM9BQ9NQ34 198 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms