RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 SLC5A6Q9Y289 635 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 IGHV3-35A0A0C4DH35 117 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 FNDC10F2Z333 226 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 IHHQ14623 411 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 TMEM255AQ5JRV8 349 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 C1orf194Q5T5A4 169 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 ZNF683Q8IZ20 524 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 TIMM9Q9Y5J7 89 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 H3BP45 60 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 SLC26A10Q8NG04 563 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 LRRC29Q8WV35 223 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 LOC102725191A0A1B0GVB3 256 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 C9orf170A2RU37 121 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 SOX8P57073 446 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 ANKRD33Q7Z3H0 272 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 OR4C13Q8NGP0 309 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 CER1O95813 267 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 ADRB3P13945 408 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 LDLRAD2Q5SZI1 272 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 NUP37Q8NFH4 326 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 PP6455Q8WZ26 134 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 VOPP1Q96AW1 172 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 PAXXQ9BUH6 204 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 LYRM4Q9HD34 91 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 ZNF581Q9P0T4 197 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 IGHV3OR15-7A0A075B7D8 119 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 RBFOX3A6NFN3 312 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 C1QTNF9BB2RNN3 333 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 LTBRP36941 435 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 CLDN15P56746 228 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 LHX8Q68G74 356 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 OR10AG1Q8NH19 301 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 ZNF488Q96MN9 340 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 DERL3Q96Q80 235 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 LMF2Q9BU23 707 aaKnown RBP3.1□□□□□ -1.91
SYNE1-201ENST00000341594 PLA2G12AQ9BZM1 189 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 JKAMPQ9P055 326 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 TMPRSS11DO60235 418 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 SMIM13P0DJ93 91 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 PRICKLE4Q2TBC4 344 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 OR5H2Q8NGV7 314 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 GPR20Q99678 358 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 VN1R1Q9GZP7 353 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 C20orf141Q9NUB4 165 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 A0A1B0GU03 582 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 CTSDP07339 412 aaPredicted RBP3.1□□□□□ -1.91
SYNE1-201ENST00000341594 HGFACQ04756 655 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 DUSP5Q16690 384 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 TPRG1Q6ZUI0 275 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 NRIP2Q9BQI9 281 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 C1RLQ9NZP8 487 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 LHX3Q9UBR4 397 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 PAM16Q9Y3D7 125 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 WIPI2Q9Y4P8 454 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 TMEM213A2RRL7 107 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 FAM90A10PA6NDY2 464 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 FAM90A18PA6NE21 464 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 FAM90A16PA6NEW6 464 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 FAM90A20PA6NIJ5 464 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 FAM90A8PA6NJQ4 464 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 FAM90A7PA6NKC0 464 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 FAM90A22PA8MWA6 464 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 FAM90A12PA8MX19 464 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 FAM90A5PA8MXJ8 464 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 FAM90A23PA8MXZ1 464 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 FAM90A15PP0C7V4 464 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 FAM90A13PP0C7W8 464 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 FAM90A14PP0C7W9 464 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 FAM90A24PP0C7X0 464 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 S100A4P26447 101 aaKnown RBP3.1□□□□□ -1.91
SYNE1-201ENST00000341594 OR8B3Q8NGG8 313 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 CDS1Q92903 461 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 PIPOXQ9P0Z9 390 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 SLC25A5P05141 298 aaKnown RBP3.1□□□□□ -1.91
SYNE1-201ENST00000341594 GPM6AP51674 278 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 PAX5Q02548 391 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 COMMD5Q9GZQ3 224 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 PPIAL4EA0A075B759 164 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 LOC105371242A0A075B767 164 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 PPIAL4CA0A0B4J2A2 164 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 PPIAL4DF5H284 164 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 PPIAL4FP0DN26 164 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 CCR2P41597 374 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 PIGTQ969N2 578 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 GEMIN7Q9H840 131 aaKnown RBP3.1□□□□□ -1.91
SYNE1-201ENST00000341594 RAB38P57729 211 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 PRTGQ2VWP7 1150 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 SEH1LQ96EE3 360 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.1□□□□□ -1.91
SYNE1-201ENST00000341594 HSPB8Q9UJY1 196 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 C17orf112F2Z3M2 114 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 NDUFS4O43181 175 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 KLK2P20151 261 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 IGFL4Q6B9Z1 124 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 M0QZQ0 153 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 P2RX1P51575 399 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 CEACAM21Q3KPI0 293 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 LINC00596Q86U02 117 aa3.1□□□□□ -1.91
SYNE1-201ENST00000341594 YRDCQ86U90 279 aaKnown RBP3.1□□□□□ -1.91
SYNE1-201ENST00000341594 ZNF595Q8IYB9 648 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 235 ms