RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 BMPR1BO00238 502 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 FCN1O00602 326 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 OPRK1P41145 380 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 SOX2P48431 317 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 HLA-DRB3P79483 266 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 AESQ08117 197 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 SYT14P1Q58G82 188 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 TEPPQ6URK8 271 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 MS4A8Q9BY19 250 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 OR2D2Q9H210 308 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 IGHV5-10-1A0A0J9YXX1 117 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 TAPBPO15533 448 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 PDCD6O75340 191 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 MPZL1O95297 269 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 GRPP07492 148 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 FOLR2P14207 255 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 MYOD1P15172 320 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 PITX1P78337 314 aaPredicted RBP2.89□□□□□ -1.95
CSMD3-202ENST00000339701 UBE2V2Q15819 145 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 TMEM52BQ4KMG9 183 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 DCAF10Q5QP82 559 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 C10orf128Q5T292 105 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 MFSD12Q6NUT3 480 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 TTC9BQ8N6N2 239 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 RPEQ96AT9 228 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 ALKBH3Q96Q83 286 aaPredicted RBP2.89□□□□□ -1.95
CSMD3-202ENST00000339701 CITED2Q99967 270 aaPredicted RBP2.89□□□□□ -1.95
CSMD3-202ENST00000339701 GAB2Q9UQC2 676 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 ARHGAP21Q5T5U3 1957 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 TRBV20-1A0A075B6N2 111 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 COX7A2P2O60397 106 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 YPEL1O60688 119 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 GNLYP22749 145 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 PRDX2P32119 198 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 RNFT1Q5M7Z0 435 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 OR2C3Q8N628 320 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 BHLHE23Q8NDY6 225 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 PTP4A1Q93096 173 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 MOGAT1Q96PD6 335 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 NEURL2Q9BR09 285 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 PLSCR3Q9NRY6 295 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 VSIG4Q9Y279 399 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 COA3Q9Y2R0 106 aaPredicted RBP2.89□□□□□ -1.95
CSMD3-202ENST00000339701 SF3B6Q9Y3B4 125 aaKnown RBP2.89□□□□□ -1.95
CSMD3-202ENST00000339701 TRAPPC1Q9Y5R8 145 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 PGPEP1LA6NFU8 196 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 STATHP02808 62 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 SP1P08047 785 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 LINC00614P0C842 121 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 CDC34P49427 236 aaPredicted RBP2.89□□□□□ -1.95
CSMD3-202ENST00000339701 CLDN18P56856 261 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 SH3BP2P78314 561 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 TNFAIP6P98066 277 aaPredicted RBP2.89□□□□□ -1.95
CSMD3-202ENST00000339701 MEF2BQ02080 365 aaPredicted RBP2.89□□□□□ -1.95
CSMD3-202ENST00000339701 MRPL2Q5T653 305 aaKnown RBP2.89□□□□□ -1.95
CSMD3-202ENST00000339701 ZNF468Q5VIY5 522 aaPredicted RBP2.89□□□□□ -1.95
CSMD3-202ENST00000339701 ATP5L2Q7Z4Y8 100 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 OSR2Q8N2R0 312 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 ZNF436-AS1Q8NC38 126 aaPredicted RBP2.89□□□□□ -1.95
CSMD3-202ENST00000339701 OR10AD1Q8NGE0 317 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 Q8WTZ3 238 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 CACNG8Q8WXS5 425 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 MED12LQ86YW9 2145 aa2.89□□□□□ -1.95
CSMD3-202ENST00000339701 GAGE10A6NGK3 116 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 G3V2L1 256 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 ZNF195O14628 629 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 OGG1O15527 345 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 PLAUP00749 431 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 PRSS12P56730 875 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 PCBP3P57721 371 aaKnown RBP2.88□□□□□ -1.95
CSMD3-202ENST00000339701 PSG9Q00887 426 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 TCTN1Q2MV58 587 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 SPATA31B1PQ5VZV4 182 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 ZNF770Q6IQ21 691 aaPredicted RBP2.88□□□□□ -1.95
CSMD3-202ENST00000339701 LILRA2Q8N149 483 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 PLPP7Q8NBV4 271 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 DNASE2BQ8WZ79 361 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 RNF11Q9Y3C5 154 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 TBL2Q9Y4P3 447 aaKnown RBP2.88□□□□□ -1.95
CSMD3-202ENST00000339701 CSPG4Q6UVK1 2322 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 SOCS6O14544 535 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 C1QTNF9P0C862 333 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 C1orf140Q5VVS0 124 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 SLC25A34Q6PIV7 304 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 ZDHHC23Q8IYP9 409 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 TMEM251Q8N6I4 163 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 OR4P4Q8NGL7 312 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 RNF166Q96A37 237 aaPredicted RBP2.88□□□□□ -1.95
CSMD3-202ENST00000339701 PCGF1Q9BSM1 259 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 WDR54Q9H977 334 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 FRG2CA6NGY1 282 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 NRG2O14511 850 aaPredicted RBP2.88□□□□□ -1.95
CSMD3-202ENST00000339701 CD8BP10966 210 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 FMODQ06828 376 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 HLA-DRB5Q30154 266 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 METRNLQ641Q3 311 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 LEMD1Q68G75 181 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 LCN10Q6JVE6 187 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 OR2Z1Q8NG97 314 aa2.88□□□□□ -1.95
CSMD3-202ENST00000339701 PLPPR1Q8TBJ4 325 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms