RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 FBXW9Q5XUX1 488 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 SIRT4Q9Y6E7 314 aaPredicted RBP8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 PCNX1Q96RV3 2341 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 ZNF253O75346 499 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 MEOX1P50221 254 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 MLF1P58340 268 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 BPIFA4PQ86YQ2 179 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 MTURNQ8N3F0 131 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 LRRC29Q8WV35 223 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 RPEQ96AT9 228 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 Q96M66 194 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 DEFB127Q9H1M4 99 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 FUT9Q9Y231 359 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 DOCK10Q96BY6 2186 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 K7ESF4 209 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 AGFG1P52594 562 aaKnown RBP8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 C16orf82Q7Z2V1 217 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 WDFY1Q8IWB7 410 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 MRGPRFQ96AM1 343 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 WFIKKN1Q96NZ8 548 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 HYAL1Q12794 435 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 TMEM255AQ5JRV8 349 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 OR1P1Q8NH06 330 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 ATOH1Q92858 354 aaPredicted RBP8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 NAGKQ9UJ70 344 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 RND3P61587 244 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 CLDN14O95500 239 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 HKR1P10072 659 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 RPL11P62913 178 aaKnown RBP8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 SLC25A47Q6Q0C1 308 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 GCSAMQ8N6F7 178 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 SGMS2Q8NHU3 365 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 TMEM45BQ96B21 275 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 GREM1O60565 184 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 POC1AQ8NBT0 407 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 TREM2Q9NZC2 230 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 ZMIZ1Q9ULJ6 1067 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 POLEQ07864 2286 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 FOXS1O43638 330 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 TNFSF15O95150 251 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 OR3A1P47881 315 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 TNFAIP6P98066 277 aaPredicted RBP8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 TSPO2Q5TGU0 170 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 TCFL5Q9UL49 500 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 FCER1GP30273 86 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 TGIF2LYQ8IUE0 185 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 TM2D1Q9BX74 207 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 LPAR5Q9H1C0 372 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 MRPS11P82912 194 aaKnown RBP8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 GAB4Q2WGN9 574 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 CCDC144NLQ6NUI1 221 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 TMEM183AQ8IXX5 376 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 DIRC3C9JPN6 131 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 TMIGD3P0DMS9 266 aaPredicted RBP8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 HIST3H3Q16695 136 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 WIPI1Q5MNZ9 446 aaPredicted RBP8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 LDLRAD3Q86YD5 345 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 MRPL32Q9BYC8 188 aaKnown RBP8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 SHANK1Q9Y566 2161 aa8.95□□□□□ -0.98
CCDC88A-202ENST00000336838 MPZL1O95297 269 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 OR5AL1P0C617 328 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 PTGDSP41222 190 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 TCTAP57738 103 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 FNDC7Q5VTL7 733 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 SOSTQ9BQB4 213 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 S100A4P26447 101 aaKnown RBP8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 RPS20P60866 119 aaKnown RBP8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 SPATA46Q5T0L3 261 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 ISOC2Q96AB3 205 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 RASL11BQ9BPW5 248 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 PLSCR2Q9NRY7 297 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 KLHDC2Q9Y2U9 406 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 OR4A8P0C604 315 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 FAM87AP0C7U9 286 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 RAB1BQ9H0U4 201 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 TMEM14DPA8MWL7 114 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 IGKV1D-16P01601 117 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 EDN3P14138 238 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 PPOXP50336 477 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 OR2I1PQ8NGU4 316 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 APOBEC4Q8WW27 367 aaKnown RBP8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 GTF3AQ92664 365 aaKnown RBP8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 ADIPOR1Q96A54 375 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 OR10AC1Q8NH08 325 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 RSRP1Q9BUV0 290 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 TMEM229AB2RXF0 380 aa8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 BHLHA15Q7RTS1 189 aaPredicted RBP8.94□□□□□ -0.98
CCDC88A-202ENST00000336838 P2RY4P51582 365 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 COL8A1P27658 744 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 MC5RP33032 325 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 RAB9AP51151 201 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 ZNF658BQ4V348 819 aaPredicted RBP8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 NCMAPQ5T1S8 102 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 MRGPRDQ8TDS7 321 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 IMMP2LQ96T52 175 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 CCL28Q9NRJ3 127 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 MRPL22Q9NWU5 206 aaKnown RBP8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 K7N7A8 449 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 GAMTQ14353 236 aa8.93□□□□□ -0.98
CCDC88A-202ENST00000336838 PSG5Q15238 335 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms