RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 ZNF439Q8NDP4 499 aa12.29□□□□□ -0.44
CCDC88C-202ENST00000334448 RFESDQ8TAC1 157 aa12.29□□□□□ -0.44
CCDC88C-202ENST00000334448 SECTM1Q8WVN6 248 aa12.29□□□□□ -0.44
CCDC88C-202ENST00000334448 DACT3Q96B18 629 aaPredicted RBP12.29□□□□□ -0.44
CCDC88C-202ENST00000334448 PHB2Q99623 299 aa12.29□□□□□ -0.44
CCDC88C-202ENST00000334448 SUCNR1Q9BXA5 334 aa12.29□□□□□ -0.44
CCDC88C-202ENST00000334448 GNG12Q9UBI6 72 aa12.29□□□□□ -0.44
CCDC88C-202ENST00000334448 GAB2Q9UQC2 676 aa12.29□□□□□ -0.44
CCDC88C-202ENST00000334448 A0A087X0M5 115 aa12.28□□□□□ -0.44
CCDC88C-202ENST00000334448 A0A1B0GX30 115 aa12.28□□□□□ -0.44
CCDC88C-202ENST00000334448 C17orf98A8MV24 154 aa12.28□□□□□ -0.44
CCDC88C-202ENST00000334448 A8MXK9 166 aa12.28□□□□□ -0.44
CCDC88C-202ENST00000334448 MPPED1O15442 326 aa12.28□□□□□ -0.44
CCDC88C-202ENST00000334448 OR2A4O95047 310 aa12.28□□□□□ -0.44
CCDC88C-202ENST00000334448 IGHV2-5P01817 119 aa12.28□□□□□ -0.44
CCDC88C-202ENST00000334448 VAMP1P23763 118 aa12.28□□□□□ -0.44
CCDC88C-202ENST00000334448 CD34P28906 385 aa12.28□□□□□ -0.44
CCDC88C-202ENST00000334448 S100GP29377 79 aa12.28□□□□□ -0.44
CCDC88C-202ENST00000334448 EIF4EBP1Q13541 118 aaPredicted RBP12.28□□□□□ -0.44
CCDC88C-202ENST00000334448 ZNF525Q8N782 197 aa12.28□□□□□ -0.44
CCDC88C-202ENST00000334448 ZNF645Q8N7E2 425 aa12.28□□□□□ -0.44
CCDC88C-202ENST00000334448 RAB39BQ96DA2 213 aa12.28□□□□□ -0.44
CCDC88C-202ENST00000334448 OR2A7Q96R45 310 aa12.28□□□□□ -0.44
CCDC88C-202ENST00000334448 CCL28Q9NRJ3 127 aa12.28□□□□□ -0.44
CCDC88C-202ENST00000334448 PTPN13Q12923 2485 aa12.28□□□□□ -0.44
CCDC88C-202ENST00000334448 DSCAML1Q8TD84 2053 aa12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 A0A1W2PPH5 198 aa12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 VWC2LB2RUY7 222 aa12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 IFNA2P01563 188 aa12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 OR8U9P0C7N5 309 aa12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 ANXA3P12429 323 aa12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 CXCL3P19876 107 aa12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 RAB7AP51149 207 aa12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 DSCR9P59020 149 aa12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 SRPXP78539 464 aa12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 SRSF4Q08170 494 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 PHLDA2Q53GA4 152 aa12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 OR5M8Q8NGP6 311 aa12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 OR8U1Q8NH10 309 aa12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 COQ8AQ8NI60 647 aa12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 ZNF596Q8TC21 504 aa12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 C10orf105Q8TEF2 133 aa12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 H1FXQ92522 213 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 IFI27L2Q9H2X8 130 aa12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 FAM212BQ9NTI7 297 aaPredicted RBP12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 KCNIP3Q9Y2W7 256 aa12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 UTP20O75691 2785 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-202ENST00000334448 PIGBOS1A0A0B4J2F0 54 aa12.26□□□□□ -0.45
CCDC88C-202ENST00000334448 TEX13DA0A0J9YY54 714 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-202ENST00000334448 H0Y980 276 aa12.26□□□□□ -0.45
CCDC88C-202ENST00000334448 PGLYRP1O75594 196 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-202ENST00000334448 GIPP09681 153 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-202ENST00000334448 TMEM187Q14656 261 aa12.26□□□□□ -0.45
CCDC88C-202ENST00000334448 ANKRD55Q3KP44 614 aa12.26□□□□□ -0.45
CCDC88C-202ENST00000334448 ZNF787Q6DD87 383 aa12.26□□□□□ -0.45
CCDC88C-202ENST00000334448 TBC1D26Q86UD7 250 aa12.26□□□□□ -0.45
CCDC88C-202ENST00000334448 C11orf42Q8N5U0 333 aa12.26□□□□□ -0.45
CCDC88C-202ENST00000334448 LINC00311Q8N616 119 aa12.26□□□□□ -0.45
CCDC88C-202ENST00000334448 DRAM1Q8N682 238 aa12.26□□□□□ -0.45
CCDC88C-202ENST00000334448 TCTEX1D1Q8N7M0 179 aa12.26□□□□□ -0.45
CCDC88C-202ENST00000334448 SSBP3Q9BWW4 388 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-202ENST00000334448 RAB18Q9NP72 206 aa12.26□□□□□ -0.45
CCDC88C-202ENST00000334448 MGAT4CQ9UBM8 478 aa12.26□□□□□ -0.45
CCDC88C-202ENST00000334448 FBN2P35556 2912 aa12.26□□□□□ -0.45
CCDC88C-202ENST00000334448 AKAP6Q13023 2319 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 IGHV3-43A0A0B4J1X8 118 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 C3orf85A0A1B0GTC6 90 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 RNF212BA8MTL3 300 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 KIAA1324LA8MWY0 1029 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 C22orf46C9J442 243 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 MMP23AO75900 390 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 IGHV3-43DP0DP04 118 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 CCL3L1P16619 93 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 F2RP25116 425 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 UCP1P25874 307 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 ATP5J2P56134 94 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 LMO4P61968 165 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 GNB2P62879 340 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 CD300CQ08708 224 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 ESCO2Q56NI9 601 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 PRAMEF5Q5TYX0 476 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 FAM53AQ6NSI3 398 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 ZNF66Q6ZN08 573 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 LIAT1Q6ZQX7 453 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 SLC25A48Q6ZT89 311 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 KIR3DL3Q8N743 410 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 GLYATL2Q8WU03 294 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 IL22RA2Q969J5 263 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 MSI2Q96DH6 328 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 C5orf30Q96GV9 206 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 TMEM56Q96MV1 263 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 PIMREGQ9BSJ6 248 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 ABHD14AQ9BUJ0 271 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 ZNF436Q9C0F3 470 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 BPESC1Q9GZL8 116 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 TMEM222Q9H0R3 208 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 OR2D2Q9H210 308 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 RANGRFQ9HD47 186 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 BEX4Q9NWD9 120 aaPredicted RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms